Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010976.1 Corchorus capsularis cultivar CVL-1 contig10997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4571
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30


Found at i:1480 original size:33 final size:32

Alignment explanation


    Indices: 1412--1528  Score: 139
    Period size: 33  Copynumber: 3.6  Consensus size: 32

       1402 TTCTTTTCAC

                      *                     
       1412 CCAAAACAGATTTATTTTCAATGC--TATCAA
          1 CCAAAACAGAATTATTTTCAATGCTATATCAA

                     *       *               
       1442 CCAAAACAGGATTATTTGCAATGCTATACTCAA
          1 CCAAAACAGAATTATTTTCAATGCTATA-TCAA

                         *    *         *    
       1475 CCAAAACAGAATTGTTTTTAATGCTATGTTCAA
          1 CCAAAACAGAATTATTTTCAATGCTAT-ATCAA

                                 
       1508 CCAAAACAGAATTAGTTTTCA
          1 CCAAAACAGAATTA-TTTTCA

       1529 TCACAATTAG


Statistics
Matches: 72,  Mismatches: 10, Indels: 6
        0.82            0.11        0.07

Matches are distributed among these distances:
  30   21  0.29
  32    2  0.03
  33   44  0.61
  34    5  0.07

ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32


Consensus pattern (32 bp):   
CCAAAACAGAATTATTTTCAATGCTATATCAA
Done.