genome.fa.s10981.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010981.1 Corchorus capsularis cultivar CVL-1 contig11002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19708

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541--578	18	2.1	19	85	9	53	71	13	15	0	1.16
1922--1981	28	2.2	28	81	3	77	41	5	11	41	1.63
1935--1980	14	3.4	13	82	8	56	41	6	15	36	1.73
2902--3101	101	1.9	105	83	5	264	40	8	16	35	1.78
3111--3137	7	3.9	7	100	0	54	88	0	0	11	0.50
3110--3140	14	2.3	13	89	10	53	90	0	0	9	0.46
3110--3163	17	3.2	16	82	7	63	81	5	1	11	0.93
8972--9144	40	4.4	40	80	12	141	50	6	17	24	1.70
8992--9137	40	3.6	41	80	7	145	52	6	17	23	1.67
9180--9288	32	3.5	32	76	20	115	53	3	18	24	1.61
9180--9262	32	2.5	33	84	13	116	53	3	19	24	1.61
9195--9289	26	3.4	26	83	12	93	52	4	16	26	1.62
9296--9431	35	3.9	35	92	5	206	55	2	24	17	1.56
9425--9810	22	19.0	20	70	17	158	51	5	20	22	1.67
9425--9705	22	13.4	21	74	12	222	51	4	21	21	1.66
9433--9666	122	1.9	121	86	6	330	50	5	21	21	1.69
9708--9798	21	4.2	21	78	2	92	52	5	17	24	1.65
9718--9810	42	2.2	43	80	5	109	48	6	20	24	1.73
9435--9783	165	2.2	160	87	5	449	51	5	20	22	1.66
12225--12264	18	2.2	18	86	4	53	67	0	32	0	0.91
13861--13919	24	2.3	26	77	11	68	16	20	3	59	1.51
13904--13976	27	2.7	27	75	10	69	16	24	1	57	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13911--13981	28	2.6	27	80	12	74	15	23	1	59	1.45
14029--14060	14	2.3	14	94	0	55	21	25	6	46	1.74
14015--14082	35	1.9	35	88	5	102	20	25	7	47	1.76
14090--14140	26	1.9	27	84	4	68	27	15	7	49	1.72
14158--14185	8	3.5	8	100	0	56	25	25	0	50	1.50
14226--14341	40	2.9	39	92	5	187	22	21	4	51	1.65
14474--14888	71	5.8	71	95	0	731	28	17	5	48	1.69
14953--15027	38	1.9	39	86	5	107	21	21	8	49	1.75

Tables:   1

The End!