Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010986.1 Corchorus capsularis cultivar CVL-1 contig11007, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24570

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2634--2878
78
3.0
81
88
5
322
35
2
17
43
1.63
3037--3069
3
11.0
3
100
0
66
66
0
0
33
0.92
6306--6663
183
2.0
183
97
0
680
29
13
23
32
1.93
7235--7269
10
3.4
10
92
4
52
11
2
0
85
0.69
8702--8734
2
16.0
2
93
6
57
48
0
3
48
1.17
9917--9978
32
1.9
32
96
0
115
25
11
22
40
1.87
9982--10026
22
2.0
22
95
0
81
33
4
11
51
1.58
10070--10134
31
2.1
31
91
0
103
35
6
20
38
1.77
13420--13487
29
2.4
28
75
20
68
30
19
16
33
1.93
14263--14404
35
4.1
35
80
1
151
29
15
21
33
1.94
14393--14618
91
2.5
91
87
5
307
26
16
24
31
1.96
15818--15879
31
2.0
31
93
0
106
35
19
6
38
1.77
17920--18004
41
2.0
42
88
2
127
37
9
17
35
1.82
17882--18049
93
1.8
91
84
5
230
40
7
16
35
1.76
18589--19069
48
10.0
48
83
4
585
13
25
21
39
1.90
19593--19635
20
2.2
19
95
4
77
27
32
16
23
1.96
22044--22111
33
2.1
33
100
0
136
36
14
17
30
1.90
23671--23698
1
28.0
1
100
0
56
0
100
0
0
0.00
24309--24353
21
2.1
21
84
8
56
35
2
6
55
1.38

Tables:   1

The End!