Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010989.1 Corchorus capsularis cultivar CVL-1 contig11010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11363
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29


Found at i:3259 original size:11 final size:10

Alignment explanation


    Indices: 3241--3274  Score: 50
    Period size: 11  Copynumber: 3.2  Consensus size: 10

       3231 GAAGTTCGTG

                      
       3241 TTTTGAAGAT
          1 TTTTGAAGAT

                       
       3251 TTCTTGAAGAT
          1 TT-TTGAAGAT

                       
       3262 ATTTTGAAGAT
          1 -TTTTGAAGAT

              
       3273 TT
          1 TT

       3275 GAAGATAATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  10    4  0.18
  11   16  0.73
  12    2  0.09

ACGTcount: A:0.29, C:0.03, G:0.18, T:0.50


Consensus pattern (10 bp):   
TTTTGAAGAT

Found at i:9817 original size:2 final size:2

Alignment explanation


    Indices: 9810--9835  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       9800 ACAAACCAGA

                                                  
       9810 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       9836 GCATGTGTAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.