Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001099.1 Corchorus capsularis cultivar CVL-1 contig01099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1045
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39


Found at i:327 original size:21 final size:21

Alignment explanation


    Indices: 303--343  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        293 TTCATGATAA

                                  
        303 CTTTGCAGACC-TTCATTTTTT
          1 CTTTGCAGACCATT-ATTTTTT

                                
        324 CTTTGCAGACCATTATTTTT
          1 CTTTGCAGACCATTATTTTT

        344 ACTCTTTTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.17, C:0.22, G:0.10, T:0.51


Consensus pattern (21 bp):   
CTTTGCAGACCATTATTTTTT
Done.