Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01010991.1 Corchorus capsularis cultivar CVL-1 contig11012, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1861
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30


Found at i:31 original size:6 final size:6

Alignment explanation


    Indices: 20--46  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

         10 AAAGCAAAGC

                                           
         20 AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAA

         47 GCAGATTAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Found at i:999 original size:10 final size:10

Alignment explanation


    Indices: 984--1008  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        974 GAGGACTCTA

                      
        984 GAATTTTCTG
          1 GAATTTTCTG

                      
        994 GAATTTTCTG
          1 GAATTTTCTG

                 
       1004 GAATT
          1 GAATT

       1009 GAGCAGGGAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG
Done.