Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010992.1 Corchorus capsularis cultivar CVL-1 contig11013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55839

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5337--5363
6
4.5
6
100
0
54
55
14
0
29
1.40
9290--9665
70
5.4
70
89
0
527
47
8
18
25
1.76
9517--9542
8
3.2
8
100
0
52
53
11
11
23
1.69
9290--9675
141
2.7
140
85
0
547
47
8
18
25
1.77
9294--9676
211
1.8
211
90
1
615
47
8
17
25
1.77
10253--10444
16
12.4
16
68
21
106
49
3
21
26
1.64
10252--10324
32
2.3
32
92
0
119
52
1
20
26
1.55
10300--10402
42
2.5
42
91
1
163
45
4
23
26
1.72
10371--10446
18
4.2
18
75
12
75
51
1
22
25
1.56
10371--10439
36
1.9
35
84
3
84
49
1
23
26
1.59
10420--10470
26
2.0
25
85
14
68
62
0
19
17
1.32
10452--10482
15
2.1
15
93
0
53
64
0
16
19
1.29
10461--10507
24
1.9
25
91
4
78
61
2
17
19
1.44
11678--11707
12
2.5
12
94
0
51
13
10
16
60
1.59
11952--12091
42
3.4
38
73
19
106
27
20
13
39
1.90
13728--13763
19
1.9
18
88
5
54
41
2
22
33
1.68
15624--15664
17
2.5
17
85
14
59
82
0
17
0
0.66
15618--15659
14
2.9
15
86
10
61
80
0
19
0
0.70
25853--25955
9
12.8
8
69
23
65
31
39
20
8
1.83
25853--25937
33
2.6
32
88
3
125
31
41
18
8
1.80
25836--25945
49
2.3
48
81
12
127
32
40
20
6
1.78
25860--25961
32
3.2
31
87
9
134
32
40
19
7
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25866--25960
48
2.0
49
85
10
133
32
40
18
8
1.81
25860--25961
16
6.3
16
79
13
111
32
40
19
7
1.80
26080--26126
21
2.2
21
92
0
76
29
8
6
55
1.55
32139--32241
16
6.5
16
77
4
102
34
35
20
8
1.84
39900--39948
21
2.3
21
85
0
62
28
28
32
10
1.90
42140--42196
30
1.9
30
92
7
98
19
35
17
28
1.94
42535--42653
33
3.6
33
86
0
157
40
15
10
33
1.81
46833--46865
17
1.9
17
93
0
57
51
3
6
39
1.42

Tables:   1

The End!