Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01010996.1 Corchorus capsularis cultivar CVL-1 contig11017, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77226

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24630--24664
17
2.0
18
88
5
54
48
2
20
28
1.63
24624--24667
17
2.6
16
82
10
52
47
2
18
31
1.61
24715--24801
43
2.0
43
93
0
147
44
24
11
19
1.83
24730--24797
20
3.2
20
66
18
57
47
20
10
22
1.80
26389--26453
32
2.0
32
96
0
121
30
24
1
43
1.64
35880--35908
3
9.7
3
100
0
58
34
0
0
65
0.93
46401--46740
174
2.0
174
92
0
572
28
25
12
33
1.92
55299--55875
50
11.6
49
82
5
640
37
18
27
16
1.92
55291--55877
150
3.9
148
84
4
750
37
18
27
16
1.92
55291--55880
200
3.0
198
82
4
751
37
18
26
16
1.92
55884--56001
40
2.9
41
87
2
157
38
19
27
13
1.89
56020--56355
39
8.3
39
76
12
250
38
20
26
14
1.91
56020--56214
79
2.5
80
80
5
234
39
21
25
14
1.91
56154--56397
127
1.9
128
83
5
316
38
22
25
13
1.91
56968--57324
51
7.0
50
72
11
206
37
14
6
41
1.72
57183--57345
51
3.2
49
74
10
134
39
14
6
40
1.70
70117--70593
183
2.6
183
85
5
622
49
7
9
33
1.64
74993--75064
15
5.1
15
71
19
55
33
1
16
48
1.55
74969--75061
41
2.3
41
90
3
143
37
1
16
45
1.54
76971--77001
4
7.8
4
100
0
62
51
22
0
25
1.48

Tables:   1

The End!