Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001100.1 Corchorus capsularis cultivar CVL-1 contig01100, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1020
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30


Found at i:598 original size:2 final size:2

Alignment explanation


    Indices: 591--625  Score: 52
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        581 ATTGTTTTAA

                                                               
        591 AT AT AT AT AT AT GAT AT AT GAT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT -AT AT AT -AT AT AT AT AT AT AT A

        626 CACCTCTGCT


Statistics
Matches: 31,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   2   27  0.87
   3    4  0.13

ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46


Consensus pattern (2 bp):   
AT

Done.