genome.fa.s11004.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011004.1 Corchorus capsularis cultivar CVL-1 contig11025, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49616

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3703--3763	23	2.6	24	80	12	65	0	37	6	55	1.26
5315--5550	124	1.9	124	91	3	386	47	16	9	26	1.77
5572--5662	23	4.0	23	74	18	91	45	26	13	15	1.83
5693--5756	31	2.0	32	90	3	103	29	23	17	29	1.97
10653--10722	31	2.2	32	82	5	88	27	15	4	52	1.61
10665--10723	31	1.9	31	89	0	91	28	15	3	52	1.58
12130--12310	22	8.3	22	71	12	97	33	9	18	38	1.83
12389--12471	22	3.8	22	71	10	71	33	7	19	39	1.79
12342--12472	22	5.9	22	70	13	63	35	8	19	37	1.82
12543--12604	21	2.7	22	80	12	72	43	9	11	35	1.73
12592--12618	14	1.9	14	100	0	54	44	14	3	37	1.63
12606--12730	22	5.6	22	76	5	117	43	10	13	32	1.78
12856--13315	22	21.1	22	67	12	126	37	10	15	36	1.81
12856--13058	44	4.8	43	74	10	141	40	9	14	34	1.79
13288--13336	22	2.2	22	85	7	64	53	4	14	28	1.59
26687--26712	6	4.3	6	100	0	52	0	30	0	69	0.89
27258--27297	20	2.0	21	85	14	57	65	15	7	12	1.47
28843--28876	17	2.1	17	88	5	52	55	17	11	14	1.68
30235--30289	24	2.3	25	81	9	69	16	18	5	60	1.55
31685--31715	4	8.0	4	92	7	55	0	0	22	77	0.77
31686--31731	15	3.3	15	88	11	71	0	0	15	84	0.62
31685--31721	19	2.0	19	94	5	67	0	0	18	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31686--31730	7	6.0	8	84	7	51	0	0	13	86	0.57
33889--33931	3	14.7	3	95	4	79	34	0	0	65	0.93
38452--38641	95	2.0	95	97	0	362	24	7	24	43	1.79
39288--39352	18	3.5	18	68	15	60	38	16	3	41	1.64
39277--39356	38	2.1	38	100	0	160	38	18	5	37	1.73
46289--46351	27	2.3	27	94	0	108	34	22	23	19	1.96

Tables:   1

The End!