Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011009.1 Corchorus capsularis cultivar CVL-1 contig11030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48333

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1619--1742
64
1.9
64
96
0
230
19
19
16
44
1.87
1624--1767
64
2.2
64
87
2
200
20
18
18
43
1.88
5948--5981
7
4.9
7
100
0
68
58
11
0
29
1.33
7224--7258
13
2.7
13
100
0
70
8
14
22
54
1.67
13907--13962
28
2.0
28
89
3
87
53
12
12
21
1.71
30893--30922
11
2.8
11
95
5
53
0
40
0
60
0.97
31608--31654
23
2.1
22
96
4
85
25
4
42
27
1.73
33521--33581
29
2.1
28
93
3
104
68
3
6
21
1.27
35320--35380
24
2.6
24
92
2
97
37
9
3
49
1.52
36387--36444
31
1.9
31
89
3
91
18
12
25
43
1.85
39441--39469
2
14.5
2
100
0
58
51
0
0
48
1.00
40929--40990
29
2.1
29
81
0
70
38
11
9
40
1.74

Tables:   1

The End!