Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011020.1 Corchorus capsularis cultivar CVL-1 contig11041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18379

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1797--1836
5
8.2
5
94
5
73
20
20
17
42
1.89
1795--1834
19
2.1
19
100
0
80
22
20
15
42
1.88
3465--3529
31
2.1
31
91
2
105
29
10
4
55
1.54
3465--3537
31
2.4
31
88
4
94
30
10
5
53
1.58
3968--4015
22
2.2
22
92
0
78
37
12
10
39
1.77
3964--4091
22
5.6
22
65
17
64
41
10
12
35
1.78
4255--4348
22
4.3
21
72
16
66
34
7
19
39
1.79
5343--5368
2
13.0
2
100
0
52
50
0
0
50
1.00
6066--6095
15
2.1
15
93
6
53
66
0
0
33
0.92
8689--8718
2
15.0
2
92
0
51
50
0
3
46
1.18
12740--13034
108
2.7
109
91
5
450
37
11
1
49
1.48
15436--15485
19
2.6
19
93
3
82
42
8
20
30
1.80
15436--15751
22
14.5
23
72
10
152
40
9
15
34
1.79
15431--15751
44
7.4
45
71
12
208
40
9
16
33
1.80
15716--15762
22
2.1
22
88
0
67
36
10
12
40
1.78
15913--15961
22
2.2
22
88
0
71
51
4
14
30
1.61
17843--17906
2
33.0
2
79
6
69
46
3
0
50
1.17
17852--17927
36
2.2
36
85
4
102
50
2
0
47
1.15

Tables:   1

The End!