Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011023.1 Corchorus capsularis cultivar CVL-1 contig11044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36402

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--902
31
2.1
30
81
13
71
38
13
7
40
1.74
3519--3557
9
4.3
9
83
0
51
53
0
2
43
1.14
5301--5343
22
2.0
22
90
0
68
32
4
34
27
1.78
7621--7664
2
22.0
2
81
9
54
43
6
0
50
1.29
8377--8412
2
18.0
2
100
0
72
50
0
0
50
1.00
10145--10289
72
2.0
73
93
1
247
44
11
11
33
1.75
10440--10477
2
19.5
2
91
5
60
44
2
0
52
1.14
10903--11121
109
2.0
109
90
1
350
27
12
12
47
1.77
12103--12176
31
2.4
31
88
4
105
29
17
8
44
1.77
12119--12179
31
2.0
31
96
0
113
29
19
6
44
1.76
13019--13080
2
29.5
2
76
20
56
43
9
0
46
1.36
13380--13404
13
1.9
13
100
0
50
16
28
8
48
1.74
14537--14591
12
4.5
12
95
4
101
34
16
23
25
1.95
14537--14591
25
2.2
24
96
3
101
34
16
23
25
1.95
14751--14775
9
2.8
9
100
0
50
12
0
0
88
0.53
15605--15640
10
3.6
10
92
0
63
30
5
22
41
1.76
15602--15640
20
2.0
20
100
0
78
30
5
20
43
1.73
21421--21458
6
6.5
6
87
6
60
52
0
0
47
1.00
25145--25179
17
2.1
17
89
10
54
20
0
20
60
1.37
29481--29678
109
1.9
107
91
5
330
48
8
11
31
1.70
32668--32827
79
2.0
79
96
0
293
30
11
14
43
1.81
33392--33468
29
2.6
30
83
10
95
31
25
10
32
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33656--33682
2
13.5
2
100
0
54
48
0
0
51
1.00
35576--35649
29
2.5
31
80
6
98
31
12
27
29
1.92

Tables:   1

The End!