Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011030.1 Corchorus capsularis cultivar CVL-1 contig11051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94514
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:945 original size:84 final size:84
Alignment explanation
Indices: 789--957 Score: 243
Period size: 84 Copynumber: 2.0 Consensus size: 84
779 AGGAGTACCA
* * * *
789 ACACTTAAAAGCATAATATGAATTCGGGTCATATGCTCCACCGATAAAAATATTAGGGTTTTGAA
1 ACACTTAAAAGCACAATATGAATTCAGGTCATAGGCTCCACCGATAAAAACATTAGGGTTTTGAA
854 ATTTCAGAAAAACTTTGTC
66 ATTTCAGAAAAACTTTGTC
* * *
873 ACACTTGAAAA-CACAAGTATGAATTTAGGTCATAGGCTCCGCCGGTAAAAACA-TAGGGTTTTG
1 ACACTT-AAAAGCACAA-TATGAATTCAGGTCATAGGCTCCACCGATAAAAACATTAGGGTTTTG
936 AAATTTCAGAAAAACTTTGTC
64 AAATTTCAGAAAAACTTTGTC
957 A
1 A
958 AAACCAAATT
Statistics
Matches: 76, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
84 42 0.55
85 34 0.45
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (84 bp):
ACACTTAAAAGCACAATATGAATTCAGGTCATAGGCTCCACCGATAAAAACATTAGGGTTTTGAA
ATTTCAGAAAAACTTTGTC
Found at i:1160 original size:29 final size:30
Alignment explanation
Indices: 1112--1171 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
1102 ATAGAAATTG
1112 AGAGCCCCATGGCAGAGATCAACAGAGCAA
1 AGAGCCCCATGGCAGAGATCAACAGAGCAA
* *
1142 AGAG-CCCATGGCGGCGATCAACAGAGCAA
1 AGAGCCCCATGGCAGAGATCAACAGAGCAA
1171 A
1 A
1172 AATTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.38, C:0.27, G:0.28, T:0.07
Consensus pattern (30 bp):
AGAGCCCCATGGCAGAGATCAACAGAGCAA
Found at i:33899 original size:19 final size:19
Alignment explanation
Indices: 33875--33913 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33865 CAGAAAGAAA
33875 TATTTCATCTTTT-CTTAAT
1 TATTTC-TCTTTTGCTTAAT
*
33894 TATTTCTGTTTTGCTTAAT
1 TATTTCTCTTTTGCTTAAT
33913 T
1 T
33914 TATAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.18, C:0.13, G:0.05, T:0.64
Consensus pattern (19 bp):
TATTTCTCTTTTGCTTAAT
Found at i:37308 original size:31 final size:31
Alignment explanation
Indices: 37270--37342 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
37260 ATACATGACA
*
37270 TGTCACTTTTTGGCACACGTGACGTGCCACG
1 TGTCACTTTTTGACACACGTGACGTGCCACG
** **
37301 TGTCACTTTTTGATTCACGTGGTGTGCCACG
1 TGTCACTTTTTGACACACGTGACGTGCCACG
*
37332 TGTTACTTTTT
1 TGTCACTTTTT
37343 TTAGCCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (31 bp):
TGTCACTTTTTGACACACGTGACGTGCCACG
Found at i:38763 original size:2 final size:2
Alignment explanation
Indices: 38756--38790 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
38746 TACCAAAAGA
38756 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
38791 GAAATAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:52613 original size:36 final size:37
Alignment explanation
Indices: 52549--52621 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
52539 ATTCGAGTAA
52549 CTCGACGGGTACTCGAGGTCAAGTATTACAAAGCTCT
1 CTCGACGGGTACTCGAGGTCAAGTATTACAAAGCTCT
52586 CTCGACGGGTACTCGA-GTCAAGTATTACAAAGCTCT
1 CTCGACGGGTACTCGAGGTCAAGTATTACAAAGCTCT
52622 ATCTTGGTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 20 0.56
37 16 0.44
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (37 bp):
CTCGACGGGTACTCGAGGTCAAGTATTACAAAGCTCT
Found at i:68748 original size:22 final size:21
Alignment explanation
Indices: 68708--68748 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
68698 AAGCAAAAAC
* *
68708 TTTATTTATTTATTTTTTTCT
1 TTTATTTAATTATTCTTTTCT
68729 TTTATTATAATTATTCTTTT
1 TTTATT-TAATTATTCTTTT
68749 AGAAAAGGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATTTAATTATTCTTTTCT
Found at i:71596 original size:11 final size:11
Alignment explanation
Indices: 71564--71592 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
71554 AGTATATATA
71564 TATATAATAAT
1 TATATAATAAT
71575 TATATAATAAT
1 TATATAATAAT
71586 TA-ATAAT
1 TATATAAT
71593 TAATAGCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TATATAATAAT
Found at i:73012 original size:34 final size:37
Alignment explanation
Indices: 72948--73021 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 37
72938 AATCAATGTC
72948 ATCAATGAATAATAACATGATTGATTCATGGCCAA-AAA
1 ATCAATGAATAATAACA--ATTGATTCATGGCCAAGAAA
72986 ATCAATGAATAATAAC-A-TGATTCATGGCCAAGAAA
1 ATCAATGAATAATAACAATTGATTCATGGCCAAGAAA
73021 A
1 A
73022 GTCGACTCTC
Statistics
Matches: 35, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
34 14 0.40
35 5 0.14
38 16 0.46
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (37 bp):
ATCAATGAATAATAACAATTGATTCATGGCCAAGAAA
Found at i:73318 original size:28 final size:27
Alignment explanation
Indices: 73286--73342 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
73276 TACCAAATAG
73286 AAATTT-TTTAATTTAAGTCAATTATTGA
1 AAATTTCTTTAA-TTAAGTC-ATTATTGA
* *
73314 AAATTTCTTTGATTAAGTCGTTATTGA
1 AAATTTCTTTAATTAAGTCATTATTGA
73341 AA
1 AA
73343 TATTAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 9 0.35
28 13 0.50
29 4 0.15
ACGTcount: A:0.37, C:0.05, G:0.11, T:0.47
Consensus pattern (27 bp):
AAATTTCTTTAATTAAGTCATTATTGA
Found at i:77586 original size:3 final size:3
Alignment explanation
Indices: 77580--77612 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
77570 ATAATAATAA
77580 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
77613 GTTTATATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:81399 original size:31 final size:31
Alignment explanation
Indices: 81364--81471 Score: 162
Period size: 31 Copynumber: 3.5 Consensus size: 31
81354 GCATGCCATG
*
81364 TGTACCAAGAAGTGACATGTGGCACGTCACA
1 TGTACCAAAAAGTGACATGTGGCACGTCACA
** * * *
81395 TGTACCAAAAAGTGACACATGTCACGCCACG
1 TGTACCAAAAAGTGACATGTGGCACGTCACA
81426 TGTACCAAAAAGTGACATGTGGCACGTCACA
1 TGTACCAAAAAGTGACATGTGGCACGTCACA
81457 TGTACCAAAAAGTGA
1 TGTACCAAAAAGTGA
81472 TCATTTTTGT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 66 1.00
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (31 bp):
TGTACCAAAAAGTGACATGTGGCACGTCACA
Found at i:83291 original size:24 final size:22
Alignment explanation
Indices: 83150--83320 Score: 97
Period size: 22 Copynumber: 7.7 Consensus size: 22
83140 TTAGAGAGGG
83150 TTATCAAAGATTTCATATGGA-A
1 TTATCAAA-ATTTCATATGGAGA
83172 TATATCAAAATTTCATATGGGGAGGA
1 T-TATCAAAATTTCATAT--GGA-GA
* * *
83198 TTATTAAAATTTTA-AAGGAAGA
1 TTATCAAAATTTCATATGG-AGA
*
83220 TTATGAAAATTTCA-A---AGA
1 TTATCAAAATTTCATATGGAGA
* * ** *
83238 -AAGCTTAATTTCATATGGAGG
1 TTATCAAAATTTCATATGGAGA
83259 TTATCAAAATTTCATATAGGTAGA
1 TTATCAAAATTTCATAT-GG-AGA
* *
83283 TTATCAAAATTTTATACTGCAG-
1 TTATCAAAATTTCATA-TGGAGA
*
83305 TTATCTAAATTTCATA
1 TTATCAAAATTTCATA
83321 GAAAGGTCAT
Statistics
Matches: 115, Mismatches: 20, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
17 8 0.07
18 4 0.03
21 2 0.02
22 53 0.46
23 12 0.10
24 22 0.19
25 12 0.10
26 2 0.02
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (22 bp):
TTATCAAAATTTCATATGGAGA
Found at i:83413 original size:22 final size:23
Alignment explanation
Indices: 83371--83422 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
83361 CATATATAAA
83371 AAAATTTTCATAGAAAGGTTATC
1 AAAATTTTCATAGAAAGGTTATC
*
83394 AAAATTTT-ATAGTCAA-GTTATC
1 AAAATTTTCATAG-AAAGGTTATC
*
83416 AACATTT
1 AAAATTT
83423 CTTAAGGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 16 0.62
23 10 0.38
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (23 bp):
AAAATTTTCATAGAAAGGTTATC
Found at i:83437 original size:22 final size:21
Alignment explanation
Indices: 83412--83475 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
83402 ATAGTCAAGT
83412 TATCAACATTTCTTAAGGAAGC
1 TATCAA-ATTTCTTAAGGAAGC
* *
83434 TATCAAAATTTCTTAGGGAGGC
1 TATC-AAATTTCTTAAGGAAGC
* *
83456 TAGCATAATTTCATAAGGAA
1 TATCA-AATTTCTTAAGGAA
83476 AACATCAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.03
22 31 0.91
23 2 0.06
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (21 bp):
TATCAAATTTCTTAAGGAAGC
Found at i:83528 original size:22 final size:24
Alignment explanation
Indices: 83503--83559 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 24
83493 ATGTCGTTAC
83503 CAAAAATTTAAAGG-GAT-ATTAT
1 CAAAAATTTAAAGGTGATGATTAT
83525 C-AAAATTTCAAAGGTTGATGATTAT
1 CAAAAATTT-AAAGG-TGATGATTAT
*
83550 CAAAATTTTA
1 CAAAAATTTA
83560 TAGGAAGGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 7 0.24
22 6 0.21
24 3 0.10
25 7 0.24
26 6 0.21
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (24 bp):
CAAAAATTTAAAGGTGATGATTAT
Found at i:83551 original size:25 final size:21
Alignment explanation
Indices: 83505--83557 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 21
83495 GTCGTTACCA
83505 AAAATTTAAAGGGATATTATC
1 AAAATTTAAAGGGATATTATC
83526 AAAATTTCAAAGGTTGATGATTATC
1 AAAATTT-AAAGG--GAT-ATTATC
83551 AAAATTT
1 AAAATTT
83558 TATAGGAAGG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.25
22 5 0.18
24 3 0.11
25 13 0.46
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (21 bp):
AAAATTTAAAGGGATATTATC
Found at i:83584 original size:22 final size:23
Alignment explanation
Indices: 83546--83639 Score: 95
Period size: 22 Copynumber: 4.2 Consensus size: 23
83536 AGGTTGATGA
*
83546 TTATCAAAATTTTATA-GGAAGG
1 TTATCAAAATTTCATACGGAAGG
* * **
83568 TTATCGAATTTTCATA-GGAAAA
1 TTATCAAAATTTCATACGGAAGG
* *
83590 TTATCAAAATTTCACAGGGAA-G
1 TTATCAAAATTTCATACGGAAGG
*
83612 TTATCAAAATTTCATACGGAGGG
1 TTATCAAAATTTCATACGGAAGG
83635 TTATC
1 TTATC
83640 TTAAATTCAT
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
22 48 0.83
23 10 0.17
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (23 bp):
TTATCAAAATTTCATACGGAAGG
Found at i:83733 original size:23 final size:23
Alignment explanation
Indices: 83683--83787 Score: 78
Period size: 22 Copynumber: 4.7 Consensus size: 23
83673 CATAAAGTGG
* *
83683 TTATCAAAATTTCA-AAGGTTAG
1 TTATCAAAATTTCATAAGGTAAA
83705 TTATCAAAATTTCATAAGG-AAA
1 TTATCAAAATTTCATAAGGTAAA
* * **
83727 TTGATC-AAGTTTCATATGG-AGG
1 TT-ATCAAAATTTCATAAGGTAAA
*
83749 TTATC-AACTCTTCAT-AGGTAAA
1 TTATCAAAAT-TTCATAAGGTAAA
*
83771 TTATTAAAATTTCATAA
1 TTATCAAAATTTCATAA
83788 ATAGATTACC
Statistics
Matches: 65, Mismatches: 12, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
21 8 0.12
22 46 0.71
23 11 0.17
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.37
Consensus pattern (23 bp):
TTATCAAAATTTCATAAGGTAAA
Found at i:90300 original size:28 final size:28
Alignment explanation
Indices: 90231--90288 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
90221 GAGTTAGAAC
90231 CTAATTAAGGAGAATCAACAACACTAGT
1 CTAATTAAGGAGAATCAACAACACTAGT
90259 CTAATTAAGGAGAATCAACAACACTAGT
1 CTAATTAAGGAGAATCAACAACACTAGT
90287 CT
1 CT
90289 TTTTGCAGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (28 bp):
CTAATTAAGGAGAATCAACAACACTAGT
Found at i:91763 original size:330 final size:330
Alignment explanation
Indices: 90578--92873 Score: 2240
Period size: 329 Copynumber: 7.0 Consensus size: 330
90568 ACCATTATAA
* * * * * * * *
90578 TTTTTCCTCAA-TTTTTGGCAAAAATTCTTATAAAATATATATAATTCAACGCCAAAAAGATTGG
1 TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAA-ATTGA
*** * * * * *
90642 AGAACTTTTCACACTTTTAATATCGTTTTT-CATATTTTTT-ATGAGTTAATTTCTAATTAAACC
65 AGGGTTTTTCACGCTTCTAATATCGTTTTTCCAT-TTTTTTCA--AATTTATTTCTAATTAAATC
*
90705 GAAACAAGATTCAGATGCAT-GTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAG
127 GAAACAAGATTCAGATGC-TCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAG
* ** * ** ** *
90769 ATGAATAAAGATATTTCAAGGAGTCTCGGCG-ATAAAAATCATACAAAACAGAACCGTGG-CCCC
191 ATGAATATAGATATTTCAAGGAGTCTTTGCGCA-AAAAATCATGCAAAATTGAGTCG-GGACTCC
* * *
90832 GGAACGCATTTTTAGTCAAAAACCGTGATGGTTAGTACATGGTTTCGGCTAAAATTTTGCTAAAA
254 GGAACGCGTTTTTAGCCAAAAA-CGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAA
*
90897 CTGACCCGAAATG
318 CTGACCCGAAAAG
* *
90910 TTTTTCCTCAA-TTTTTTGCTACAATA-TCAGAAAAAATATATAATTCAATGCCAAAAAAATTGA
1 TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCC-AAAAAATTGA
* * * *
90973 AGGGGTTTTCACGGTTCAAATATCGTTTTTCCATTTTTTT-AGAATTTATTT-TAATTAAATTGA
65 AGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCA-AATTTATTTCTAATTAAATCGA
* * * * * * *
91036 AATAAGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCAATATGGCTGACATTTGGTGACATA
129 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * * ** * **
91101 AATATAGATATTTCAAGGAGTCTTTCCGGATAAAATCATGCAAAATTGAG-CCAGAGCCCCAAAA
194 AATATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGA-CTCCGGAA
* * *
91165 CGCGTTTTTATCCAAAAATCGTGATGGTTAGTATATGGTTTCGGCT---A-------AAAACTGA
258 CGCGTTTTTAGCCAAAAA-CGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGA
91220 CCCGAAAAG
322 CCCGAAAAG
* * * * * *
91229 TTTTTTTTTTCTCAATTTTTTTTGACACAATACTCAGAAAAATTATAT-ATCACAACACAAAAAA
1 ----TTTTTCCTCAA-TTTTTTTGCCACAATACTCAGAAAAAATATATAAT-TCAACGC-CAAAA
* * * * * * *
91293 AATTGAAGGGTTTTTTACGCTTTTAATATCG-TTTTCCAATTTTTCCGAATTAATTTCTATTTAA
59 AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCAAATTTATTTCTAATTAA
* * * * * *
91357 AACGAAACCAGATTAAGATGCTCTTAAAAACAAATCCTTCAATCCAATGTGGCTAAGATTTGGTT
124 ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT
* * * * * *
91422 CGATGAATATAGATATTTTAGGGAATCTTTGCGTAAAAAATCATGAAAAATTGAGTCGGGACTCC
189 AGATGAATATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGACTCC
** * * * *
91487 TTAACGCGTTTTTAGCCAAAAACGCTGATGGTTAGTACAAGATTTCGGATAAAATTTTGCGAAAA
254 GGAACGCGTTTTTAGCCAAAAACG-TGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAA
* *
91552 TTGGCCCGAAAAG
318 CTGACCCGAAAAG
* * * *
91565 TTTTTCCTCAA-TTTTTTCCCACAATACTCAGAAACAATATATAATTGAATGCCAAAAAA-TGAA
1 TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTGAA
91628 GGG-TTTTCACGCTTCTAATATCGTTTTTCCACTTTTTTTCCAAATTTATTTCTAATTAAATCGA
66 GGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTT-CAAATTTATTTCTAATTAAATCGA
* * * * *
91692 AACAAGATTCAAATGCTCGTAAAAAAAAATCTTTAAATCCAATGTGGTTGAGATTTGGTTTGATG
129 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * * * * *
91757 AATATAGATATTTCACGTAGTCTTTGCGCCAAAAATCATGCAAGACTGAGTCGGGGCTCCGGAAC
194 AATATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGACTCCGGAAC
* * * *
91822 GCGTTTTTAGTCAAAAATTGTGATGATTAGTACACGGTTTCAGCTAAAATTTTGCTAAAACTGAC
259 GCGTTTTTAGCCAAAAA-CGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGAC
*
91887 CCGAAATG
323 CCGAAAAG
* * * *
91895 CTTTTCCTCAA-TTTTTTGCTACAATTCTCAG-AAAAATATATAATTCAACGTCAAGAAAATTGA
1 TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAA-AAAATTGA
* * * *
91958 AGGGTTTTTCACGCTTCAAATATCATTTTCCCATTTTTTT-AGAATTTATTT-TAATTAAATTGA
65 AGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCA-AATTTATTTCTAATTAAATCGA
* * * * * *
92021 AATAAGATTCGGATGCTCGTAAAAAAAAATCCTTAAATCCAATGTGGCCGACATTTGGTTACATG
129 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
* * * * * * *
92086 AATATAGATATTTCAAGGACTCTTT-CTGGAAAAAATCATACAAAACTGAGCCGGGGCCCCGGAA
194 AATATAGATATTTCAAGGAGTCTTTGC-GCAAAAAATCATGCAAAATTGAGTCGGGACTCCGGAA
* * * * *
92150 TGCGATTTTATCCAAAAATCGTGATGGTTAGTATACGGTTTCAGCT---A-------AAAACTGA
258 CGCGTTTTTAGCCAAAAA-CGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGA
* *
92205 CCTGAAAAT
322 CCCGAAAAG
* ** ** *
92214 TTTTTTCTCAATTTTTTTGAAACAATACTCAGAAAAAATATATAACACAACGCAAAAAAAATTGA
1 TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGC-CAAAAAATTGA
* * ** * * * *
92279 AGGGTTTTTTACGCTTTTAATATCGTTTTT-CA-AATTTTCGAATTAATTTCTATTTAAAACGAA
65 AGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCAAATTTATTTCTAATTAAATCGAA
* * * * *
92342 ACCAGATTAAGATGCTCGTAAAAACAAATCCTTCAATCCAATGTGGCTAAGATTTGGTTTGATGA
130 ACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGA
* * * * *
92407 ATATATATATTTCAGGGAGTCTTTGTGTC-AAAAATCATGCAAAATTGAGTCGGGACTGCGTAAC
195 ATATAGATATTTCAAGGAGTCTTTGCG-CAAAAAATCATGCAAAATTGAGTCGGGACTCCGGAAC
* * * * * * * * * *
92471 GCGTTTTTAGCCGAAAACTTTGATAGTTAGTACACGATTTCAGATAAAATATTGCAAAAATTGGC
259 GCGTTTTTAGCCAAAAAC-GTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGAC
92536 CCGAAAAG
323 CCGAAAAG
* * * * **
92544 TTTTACCTCAATTTTTTTCCCATAATACTCAGAAAAAATATATAATTGAGTGCCAAAAAAATTGA
1 TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCC-AAAAAATTGA
* *
92609 AGGG-TTTTCACGCTTCTAATATCG-TTTTCCCTTTTTTTCCCCTAATTTATTTCTAATTAAATC
65 AGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTT---CAAATTTATTTCTAATTAAATC
* * * **
92672 GAAACAAGATTCAGATGCTTGTAAAAA-AAATCCTTATATCCAATGTGGTTGAGATTTGGTTCCA
127 GAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGA
* * *
92736 TGAATATAGATATTT-AAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCTGG
192 TGAATATAGATATTTCAA-GGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGACTCCGG
* * *
92800 AACGCGTTTTTAGTCAAAAACAGTGATGGTTATTACATGGTTTCGGCTAAAATTTTGCTAAAACT
256 AACGCGTTTTTAGCCAAAAAC-GTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACT
92865 GACCCGAAA
320 GACCCGAAA
92874 TAGATATTTC
Statistics
Matches: 1601, Mismatches: 298, Indels: 130
0.79 0.15 0.06
Matches are distributed among these distances:
319 52 0.03
320 167 0.10
321 50 0.03
322 2 0.00
323 11 0.01
325 37 0.02
326 197 0.12
327 22 0.01
328 21 0.01
329 361 0.23
330 340 0.21
331 75 0.05
332 209 0.13
333 42 0.03
336 15 0.01
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (330 bp):
TTTTTCCTCAATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAATTGAA
GGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCAAATTTATTTCTAATTAAATCGAAA
CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAA
TATAGATATTTCAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGACTCCGGAACGC
GTTTTTAGCCAAAAACGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGACCCG
AAAAG
Found at i:92983 original size:132 final size:132
Alignment explanation
Indices: 92741--93004 Score: 368
Period size: 132 Copynumber: 2.0 Consensus size: 132
92731 TTCCATGAAT
*
92741 ATAGATATTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCTGGAACGCG
1 ATAGATATTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGACTCTGGAACGCG
* * * * * ** * *
92806 TTTTTAGTCAAAAACAGTGATGGTTATTACATGGTTTCGGCTAAAATTTTGCTAAAACTGACCCG
66 TTTTTAGCCAAAAACACTGATGGTTAGTACACGATTTCGAATAAAATTTTACAAAAACTGACCCG
92871 AA
131 AA
* * * *
92873 ATAGATATTTCAGGGAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTTGGGACTGC-GTAACGC
1 ATAGATATTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGACT-CTGGAACGC
* *
92937 GTTTTTAGCCGAAAACACTGATGGTTAGTACACGATTTCGAATAAAATTTTACAAAAATTGACCC
65 GTTTTTAGCCAAAAACACTGATGGTTAGTACACGATTTCGAATAAAATTTTACAAAAACTGACCC
93002 GAA
130 GAA
93005 TAGTTTTTCA
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
132 114 0.99
133 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (132 bp):
ATAGATATTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGACTCTGGAACGCG
TTTTTAGCCAAAAACACTGATGGTTAGTACACGATTTCGAATAAAATTTTACAAAAACTGACCCG
AA
Found at i:93300 original size:456 final size:457
Alignment explanation
Indices: 92413--93330 Score: 1466
Period size: 456 Copynumber: 2.0 Consensus size: 457
92403 ATGAATATAT
*
92413 ATATTTCAGGGAGTCTTTGTGTCAAAAATCATGCAAAATTGAGTCGGGACTGCGTAACGCGTTTT
1 ATATTTCAGGGAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTCGGGACTGCGTAACGCGTTTT
** * *
92478 TAGCCGAAAACTTTGATAGTTAGTACACGATTTCAGATAAAATATTGCAAAAATTGGCCCGAAAA
66 TAGCCGAAAACACTGATAGTTAGTACACGATTTCAGATAAAATATTACAAAAATTGACCCGAAAA
* * * *
92543 GTTTTACCTCAATTTTTTTCCCATAATACTCAGAAAAAATATATAATTGAGTGCCAAAAAAATTG
131 GTTTTACATCAA-TTTTTTCCCACAATACTCAGAAAAAATATATAATTGAATGCCAAAAAAAATG
*
92608 AAGGGTTTTCACGCTTCTAATATCGTTTTCCCTTTTTTTCCCCTAATTTATTTCTAATTAAATCG
195 AAGAGTTTTCACGCTTCTAATATCG---T--C-TTTTTTCCCCTAATTTATTTCTAATTAAATCG
* *
92673 AAACAAGATTCAGATGCTTGTAAAAAAAATCCTTATATCCAATGTGGTTGAGATTTGGTTCCATG
254 AAACAAGATTCAGATGCTCGTAAAAAAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTCCATG
* *
92738 AATATAGATATTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTGAGTCGGGGCTCTGGAAC
319 AATATAGATATTTAAGGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGTCGGGGCTCTGAAAC
* * *
92803 GCGTTTTTAGTCAAAAACAGTGATGGTTATTACATGGTTTCGGCTAAAATTTTGCTAAAACTGAC
384 ACGTTTTTAGTCAAAAACAGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGAC
92868 CCGAAATAG
449 CCGAAATAG
*
92877 ATATTTCAGGGAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTTGGGACTGCGTAACGCGTTTT
1 ATATTTCAGGGAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTCGGGACTGCGTAACGCGTTTT
* * *
92942 TAGCCGAAAACACTGATGGTTAGTACACGATTTC-GAATAAAATTTTACAAAAATTGACCCGAAT
66 TAGCCGAAAACACTGATAGTTAGTACACGATTTCAG-ATAAAATATTACAAAAATTGACCCGAAA
* * *
93006 AGTTTTTCATCAA-TTTTTCCCACAATACTTAGATAAAATATATAATTGAATGCCAAAAAAAATG
130 AGTTTTACATCAATTTTTTCCCACAATACTCAGAAAAAATATATAATTGAATGCCAAAAAAAATG
93070 AAGAGTTTTCACGCTTCTAATATCG-C-TTTTTCCCCTAATTTATTTCTAATTAAATCGAAACAA
195 AAGAGTTTTCACGCTTCTAATATCGTCTTTTTTCCCCTAATTTATTTCTAATTAAATCGAAACAA
* * *
93133 GATTCAGATGCTCGTAGAAAAAAAATCTTTAAATCTAATGTGGTTGAGATTTGGTTCGATGAATA
260 GATTCAGATGCTCGT--AAAAAAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTCCATGAATA
*
93198 TAGATATTTTAGGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGTCGGGGCTCTGAAACACGT
323 TAGATATTTAAGGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGTCGGGGCTCTGAAACACGT
93263 TTTTAGTCAAAAACAGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGACCCGA
388 TTTTAGTCAAAAACAGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGACCCGA
93328 AAT
453 AAT
93331 GTTTTTCCTC
Statistics
Matches: 423, Mismatches: 28, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
454 51 0.12
456 172 0.41
462 70 0.17
463 1 0.00
464 129 0.30
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (457 bp):
ATATTTCAGGGAGTCTTTGCGTCAAAAATCATGCAAAATTGAGTCGGGACTGCGTAACGCGTTTT
TAGCCGAAAACACTGATAGTTAGTACACGATTTCAGATAAAATATTACAAAAATTGACCCGAAAA
GTTTTACATCAATTTTTTCCCACAATACTCAGAAAAAATATATAATTGAATGCCAAAAAAAATGA
AGAGTTTTCACGCTTCTAATATCGTCTTTTTTCCCCTAATTTATTTCTAATTAAATCGAAACAAG
ATTCAGATGCTCGTAAAAAAAATCCTTAAATCCAATGTGGTTGAGATTTGGTTCCATGAATATAG
ATATTTAAGGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGTCGGGGCTCTGAAACACGTTTT
TAGTCAAAAACAGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCTAAAACTGACCCGAAAT
AG
Found at i:93822 original size:316 final size:319
Alignment explanation
Indices: 92873--94275 Score: 1270
Period size: 324 Copynumber: 4.3 Consensus size: 319
92863 CTGACCCGAA
* * * * * *
92873 ATAGATATTTCAGGGAGTCTTTGCGTC-AAAAATCATGCAAAATTGAGTTGGGACTGCGTAACGC
1 ATAGATATTTTAAGGAGTCTTTGCG-CAAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGC
* * * * *
92937 GTTTTTAGCCGAAAACACTGATGGTTAGTACACGATTTCGAATAAAATTTTACAAAAATTGACCC
65 GTTTTTAGTCAAAAACAGTGATGGTTAGTACACGATTTC-----AAA-TCT--AAAAACTGACCC
* * ** * * * *
93002 GAATAGTTTTTCATCAATTTTTCCCACAATACTTAGATAAAATATATAATTGAATGCCAAAAAAA
122 GAAAAGTTTTTCCTCAATTTTTTGCACAATACTCA-AAAAAATATATAATTCAACGCCAAAAAAA
* * * ** * *
93067 ATGAAGAGTTTTCACGCTTCTAATATCGCTTTTT-C-----CCCTAATTTATTTCTAATTAAATC
186 TTGAAGGGTTTTCACGCTTTTAATATCG-TTTTTACATTTTTTCGAATTTATTTTTAATTAAATC
* * * *
93126 GAAACAAGATTCAGATGCTCGTAGAAAAAAAATCTTTAAATCTAATGTGGTTGAGATTTGGTTCG
250 GAAACAAGATTCAGATGCTCGTA-AAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCG
93191 ATGAAT
314 ATGAAT
* * * * * *
93197 ATAGATATTTTAGGGAGTCTTTGCACCAAAAATCATGCAAAATTGAGTCGGGGCTCTGAAACACG
1 ATAGATATTTTAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGCG
*
93262 TTTTTAGTCAAAAACAGTGATGGTTAGTACACGGTTTCGGCTAAAATTTTGCT-AAAACTGACCC
66 TTTTTAGTCAAAAACAGTGATGGTTAGTACACGATTT---C--AAA---T-CTAAAAACTGACCC
* * *
93326 GAAATGTTTTTCCTCAATTTTTTGCTACAATACTCAGAAAAAATTTATAATTCAACGCCAAGAAA
122 GAAAAGTTTTTCCTCAATTTTTTGC-ACAATACTCA-AAAAAATATATAATTCAACGCCAAAAAA
** *
93391 ATTGAAGGGTTTTCACGCTTCAAATATCGTTTTTACACTTTTTTAGAATTTA-TTTTAATTAAAT
185 ATTGAAGGGTTTTCACGCTTTTAATATCGTTTTTACA-TTTTTTCGAATTTATTTTTAATTAAAT
* * * * * *
93455 TGAAATAGGATTCGGATGCTCGTAAAAACAAATCCTTAAATCCAGTGTGGCTGACATTTGGTTAC
249 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-C
93520 -ATGAAT
313 GATGAAT
* * * *
93526 ATAGATATTTCAAGGAGT-TTCTG-G-AAAAAATCATACAAAATTGAGTCGGGGCCCCGGAATGC
1 ATAGATATTTTAAGGAGTCTT-TGCGCAAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGC
* * *
93588 GTTTTTA-TCCAAAAATC-GTGATGGTTAGTATACGATTTC-AA-CTAAAAACTGACCTGAAAAA
65 GTTTTTAGT-CAAAAA-CAGTGATGGTTAGTACACGATTTCAAATCTAAAAACTGACCCGAAAAG
* ** *
93649 TTTTTTCTCAATCTTTTTGACACAATACTC-AAAAAATATATAACACAACGCAAAAAAAATTGAA
128 TTTTTCCTCAAT-TTTTTG-CACAATACTCAAAAAAATATATAATTCAACGCCAAAAAAATTGAA
* ** * * *
93713 GGGTTTTTTACGCTTTTAATATCGTTTTT-CAAATTTTCGAATTAATTTTTATTTAAAACGAAAC
191 GGG-TTTTCACGCTTTTAATATCGTTTTTACATTTTTTCGAATTTATTTTTAATTAAATCGAAAC
* * * * * *
93777 CAGATTAAGATGCTCGTAAAAACAAATCCTTCAATCCAATGTGGCTAAGATTTTGTTTGATGAAT
255 AAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCGATGAAT
* * * * * * *
93842 ATATATATTTTAGGGAGTCTTTGTGTC-AAAAATAATGCAAAATTGAGTCGGGACTGCGTAACGC
1 ATAGATATTTTAAGGAGTCTTTGCG-CAAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGC
* * * * *
93906 GTTTTTAGCCGAAAAC-GCTGATGGTTAGTACACGATTTCAGATAAAATTTTGCAAAAATTGGCC
65 GTTTTTAGTCAAAAACAG-TGATGGTTAGTACACGATTTC-----AAA-TCT--AAAAACTGACC
* * * * **
93970 CGAAAAGTTTTACCTCAATTTTTTTTCCATAATACTCAGAAAAAATATATAATTGAGTGCCAAAA
121 CGAAAAGTTTTTCCTCAA--TTTTTTGCACAATACTCA-AAAAAATATATAATTCAACGCCAAAA
* * * * *
94035 AAATTGAAGGGTTTTCATG-TTTCTAATATCGTTTTTCCTTTTTTTTCCTAATTTATTTCTAATT
183 AAATTGAAGGGTTTTCACGCTTT-TAATATCGTTTTTAC-ATTTTTT-CGAATTTATTTTTAATT
* * * *
94099 AAATCGAAACAAGAGTCAGATGCTTGTAAAAA-AAATCCTTAAATCCAATGTAGTTGAGATTTGG
245 AAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGG
94163 TTCGATGAAT
310 TTCGATGAAT
* * *
94173 ATAGATA-TTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTAAGTCGGGGCTCTGGAACGC
1 ATAGATATTTTAA-GGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGC
* *
94237 GTTTTTAGTCAAAAACAGTGATGGTTATTACACGGTTTC
65 GTTTTTAGTCAAAAACAGTGATGGTTAGTACACGATTTC
94276 GGCTAAAATT
Statistics
Matches: 881, Mismatches: 146, Indels: 97
0.78 0.13 0.09
Matches are distributed among these distances:
315 10 0.01
316 121 0.14
317 52 0.06
318 77 0.09
319 1 0.00
321 2 0.00
323 1 0.00
324 131 0.15
325 60 0.07
326 4 0.00
327 65 0.07
328 38 0.04
329 81 0.09
330 70 0.08
331 127 0.14
332 41 0.05
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (319 bp):
ATAGATATTTTAAGGAGTCTTTGCGCAAAAAATCATGCAAAATTGAGTCGGGGCTCCGGAACGCG
TTTTTAGTCAAAAACAGTGATGGTTAGTACACGATTTCAAATCTAAAAACTGACCCGAAAAGTTT
TTCCTCAATTTTTTGCACAATACTCAAAAAAATATATAATTCAACGCCAAAAAAATTGAAGGGTT
TTCACGCTTTTAATATCGTTTTTACATTTTTTCGAATTTATTTTTAATTAAATCGAAACAAGATT
CAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTCGATGAAT
Found at i:94415 original size:132 final size:132
Alignment explanation
Indices: 94173--94437 Score: 370
Period size: 132 Copynumber: 2.0 Consensus size: 132
94163 TTCGATGAAT
* *
94173 ATAGATATTTAAGGGAGTCTTTGCGCCAAAAATCATGCAAAATTAAGTCGGGGCTCTGGAACGCG
1 ATAGATATTTAAGGGAGTCTTTACGCCAAAAATCATGCAAAATTAAGTCGGGACTCTGGAACGCG
* * * * * *
94238 TTTTTAGTCAAAAACAGTGATGGTTATTACACGGTTTCGGCTAAAATTTTGCTAAAACTGACCCG
66 TTTTTAGACAAAAACACTGATGGTTAGTACACGATTTCGGATAAAATTTTGCAAAAACTGACCCG
94303 AA
131 AA
* * * *
94305 ATAGATATTTCAGGGAGTCTTTACGTCAAAAATCATGCAAAATTGAGTCGGGACTGC-GTAACGC
1 ATAGATATTTAAGGGAGTCTTTACGCCAAAAATCATGCAAAATTAAGTCGGGACT-CTGGAACGC
* * * *
94369 GTTTTTAGACGAAAACACTGATGGTTAGTACATGATTTCGGATAAAATTTTGCAAAAATTGGCCC
65 GTTTTTAGACAAAAACACTGATGGTTAGTACACGATTTCGGATAAAATTTTGCAAAAACTGACCC
94434 GAA
130 GAA
94437 A
1 A
94438 AGTTTTACCT
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
132 115 0.99
133 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (132 bp):
ATAGATATTTAAGGGAGTCTTTACGCCAAAAATCATGCAAAATTAAGTCGGGACTCTGGAACGCG
TTTTTAGACAAAAACACTGATGGTTAGTACACGATTTCGGATAAAATTTTGCAAAAACTGACCCG
AA
Done.