Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011035.1 Corchorus capsularis cultivar CVL-1 contig11056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95931

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--6262
321
19.6
322
87
3
8422
33
15
16
34
1.90
1--6262
644
9.8
644
86
3
8501
33
15
16
34
1.90
8732--8777
13
3.4
13
85
8
65
8
6
13
71
1.29
10286--10440
33
4.7
33
81
4
188
49
12
32
5
1.64
10431--10471
21
1.9
22
85
5
57
41
17
36
4
1.71
22970--22995
12
2.2
12
100
0
52
38
7
0
53
1.30
22973--23011
12
3.2
12
85
7
51
46
2
2
48
1.29
30826--30891
33
2.0
33
85
5
89
45
15
16
22
1.85
34790--34824
3
11.7
3
93
0
61
0
37
0
62
0.95
42487--42513
3
9.0
3
100
0
54
0
33
0
66
0.92
45951--45991
21
1.9
22
90
5
66
31
14
4
48
1.65
59694--59719
2
13.0
2
100
0
52
50
0
0
50
1.00
71215--71241
13
2.1
13
100
0
54
37
14
25
22
1.93
79894--79923
14
2.1
14
93
0
51
80
6
10
3
1.01
80920--80979
18
3.2
18
68
32
54
23
18
15
43
1.87
80920--80996
38
2.0
38
100
0
154
23
18
15
42
1.88
94410--94462
27
2.0
27
82
7
65
39
11
1
47
1.50

Tables:   1

The End!