Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011036.1 Corchorus capsularis cultivar CVL-1 contig11057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43716

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
677--702
3
8.7
3
100
0
52
69
0
0
30
0.89
5937--5969
2
16.5
2
100
0
66
51
0
0
48
1.00
13873--13908
2
18.0
2
100
0
72
50
0
0
50
1.00
20013--20041
2
14.5
2
100
0
58
51
0
0
48
1.00
27047--27078
2
16.5
2
93
6
57
46
0
0
53
1.00
38978--39057
32
2.5
31
89
2
115
11
18
32
37
1.87
39510--39549
21
2.0
20
95
5
71
5
30
45
20
1.72
39753--40039
32
9.2
32
80
4
280
10
27
31
30
1.90
40574--40701
50
2.6
50
88
7
197
30
30
15
23
1.95
41262--41333
22
3.3
22
76
7
67
6
33
41
18
1.77
42150--42362
91
2.3
93
82
4
252
14
23
30
31
1.94
42309--42424
32
3.6
32
84
2
153
13
28
29
28
1.95
42212--42535
155
2.1
154
83
4
402
13
26
29
30
1.94
42454--42534
32
2.6
32
80
2
92
12
30
29
27
1.93
42491--42555
31
2.1
32
85
2
87
7
30
32
29
1.85
42958--43035
22
3.6
22
77
3
77
6
33
42
17
1.75
43174--43403
91
2.5
93
80
3
277
15
23
29
31
1.95
43353--43485
32
4.2
32
83
1
160
12
28
30
29
1.92
43254--43668
186
2.3
178
80
9
435
12
26
29
31
1.93
43528--43707
31
5.7
31
79
3
173
10
27
31
30
1.90
43568--43707
63
2.2
62
85
1
181
10
28
32
29
1.89
43536--43707
94
1.8
94
84
0
236
10
27
31
30
1.90

Tables:   1

The End!