Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011039.1 Corchorus capsularis cultivar CVL-1 contig11060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91627

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9113--9148
3
12.3
3
88
5
56
66
0
33
0
0.92
12540--12595
13
3.9
14
72
25
53
41
23
7
28
1.80
31748--31805
29
2.0
29
100
0
116
41
3
27
27
1.72
35425--35462
19
2.1
19
90
5
60
15
7
21
55
1.66
42045--42112
34
2.0
34
97
0
127
29
16
11
42
1.83
43661--43715
27
2.1
25
90
6
83
34
14
5
45
1.68
59952--59980
14
2.1
14
100
0
58
72
0
6
20
1.07
68966--68998
14
2.4
14
90
10
50
3
6
3
87
0.71
71985--72042
19
2.9
19
76
5
53
31
17
12
39
1.86
72152--72182
2
16.0
2
93
6
55
51
0
0
48
1.00
75204--75236
2
16.5
2
93
0
57
48
0
3
48
1.17
77892--77929
20
1.9
20
84
10
51
44
5
42
7
1.56
78573--78745
74
2.3
74
87
2
231
21
12
13
52
1.74
78638--78857
112
2.0
112
97
0
413
24
12
12
50
1.74
78771--79258
106
4.7
104
81
12
544
25
12
11
50
1.74
78935--78969
17
2.1
17
100
0
70
17
11
11
60
1.59
78877--79043
91
1.8
91
97
0
316
22
13
12
51
1.74
78952--79163
110
1.9
110
99
0
415
23
12
12
51
1.73
78968--79258
110
2.7
106
86
4
343
25
12
11
50
1.73
78643--79258
307
2.0
309
97
0
1173
24
12
11
50
1.73
79327--79434
54
2.0
54
94
0
189
27
17
6
48
1.72
84036--84078
22
2.0
22
85
0
59
48
20
18
11
1.79

Tables:   1

The End!