Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011040.1 Corchorus capsularis cultivar CVL-1 contig11061, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  181526

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6458--6546
45
2.0
45
93
0
151
35
23
23
16
1.95
9632--9680
21
2.3
21
85
0
71
61
30
0
8
1.25
9632--9679
15
3.2
15
84
0
60
62
31
0
6
1.20
9641--9679
3
13.0
3
83
0
51
64
30
0
5
1.15
9858--9900
21
2.1
20
86
4
59
18
60
0
20
1.36
13047--13074
2
14.0
2
100
0
56
50
0
0
50
1.00
13276--13322
21
2.2
21
92
0
76
36
10
17
36
1.84
24605--24634
14
2.1
14
100
0
60
43
0
16
40
1.48
29153--29204
26
2.0
26
88
0
77
42
0
13
44
1.44
30305--30675
185
2.0
185
100
0
742
22
18
17
41
1.90
30929--31031
29
3.4
29
77
4
80
18
29
16
35
1.93
31209--31288
29
2.7
30
78
7
92
36
15
30
18
1.92
32534--32569
18
2.0
18
88
0
54
44
16
22
16
1.86
40554--40579
5
5.2
5
100
0
52
42
19
0
38
1.51
45817--45961
31
4.6
31
87
1
209
34
25
22
17
1.96
45817--45961
63
2.3
61
89
5
211
34
25
22
17
1.96
45808--46008
31
6.5
31
83
2
206
33
25
22
18
1.97
45820--46002
94
1.9
94
84
2
242
34
24
22
18
1.96
63856--63886
16
1.9
16
93
0
53
74
6
9
9
1.23
64103--64150
11
4.4
11
86
7
53
41
2
2
54
1.24
71608--71660
26
2.0
26
100
0
106
47
11
3
37
1.58
71663--71713
20
2.5
21
80
6
68
54
13
3
27
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72145--72247
52
2.0
52
94
3
181
41
12
6
38
1.70
75822--75872
2
25.5
2
84
15
70
45
1
1
50
1.24
75819--75870
24
2.1
25
92
3
88
44
1
1
51
1.23
75827--75878
11
5.0
11
86
11
58
44
1
5
48
1.38
80365--80396
4
8.0
4
100
0
64
75
0
0
25
0.81
86465--86506
7
6.3
7
83
10
61
2
14
0
83
0.75
86465--86506
13
3.2
13
86
13
59
2
14
0
83
0.75
86467--86506
19
2.0
20
90
4
64
2
12
0
85
0.71
94140--94167
2
14.0
2
100
0
56
0
50
0
50
1.00
95097--95337
121
2.0
121
98
0
464
26
14
19
39
1.90
98346--98376
12
2.7
12
95
5
55
0
0
93
6
0.35
98344--98377
16
2.1
16
94
0
59
0
0
88
11
0.52
102918--102953
2
18.5
2
94
5
65
0
47
0
52
1.00
118269--118312
21
2.1
21
83
8
54
20
29
13
36
1.91
118358--118488
33
4.0
33
87
5
176
17
40
30
11
1.85
144506--144541
15
2.5
15
90
4
56
50
38
11
0
1.38
147042--147067
9
2.9
9
100
0
52
42
34
23
0
1.54
152526--152558
6
5.5
6
92
0
57
18
27
18
36
1.94
154513--154552
1
40.0
1
100
0
80
0
0
0
100
0.00
158557--158588
6
5.5
6
96
3
57
87
0
12
0
0.54
160953--160988
1
36.0
1
100
0
72
0
0
0
100
0.00
161554--161581
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
174017--174051
2
17.5
2
100
0
70
0
0
48
51
1.00
176795--181514
322
14.6
324
78
9
3745
35
17
14
32
1.90
178189--181526
322
10.3
318
82
6
3756
35
16
14
32
1.90
178189--181526
978
3.4
965
88
3
4647
35
16
14
32
1.90

Tables:   1

The End!