Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011041.1 Corchorus capsularis cultivar CVL-1 contig11062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6007
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Found at i:1780 original size:323 final size:320
Alignment explanation
Indices: 1186--5985 Score: 3771
Period size: 323 Copynumber: 14.9 Consensus size: 320
1176 TTTTTATGCC
* * * *
1186 ACTCAGAAAAAATATAAAATTCATTGCAATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* **
1251 TTTCCCATTTTTTTTAGAATTAAAATCTAATTAAATCGAAACAAGATTCT-GATGCTCGTAAAAA
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATT-TAGATGCTCGTAAAAA
*
1315 CCAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
130 -CAAATCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
* *
1380 GCTCCAAAAATCAGGCACAACTGAGCCGGAGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGAT
194 GCTCCAAAAATCATGCAAAACTGAGCCGG-GCCCCGAAACGCG-TTTTTGCCCAAAAACCGTGAT
*
1445 GGTTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
257 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
* *
1509 ACTCAGAAAAAATATATAAATAATCGCTATAAAGATTGAAGGGGATTTTCACGCTTCTAATATCG
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAA-GGGATTTTCACGCTTCTAATATCG
* ** * * *
1574 TTTTTCCA-TTTTTCCAGAATTTATTTCTAATTAAATCTAAACAAGATTTACATGCTTGTAAAAA
65 TTTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAA
1638 CAAATCGTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
130 CAAATC-TTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
** *
1703 GCTCCAAAAATCATGCAAAACTGAGCCTTAGCCCCGAAACGCGTTTCTTGCCCAAAAACCGTTAT
194 GCTCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCGTTT-TTGCCCAAAAACCGTGAT
* *
1768 GGTTACTACACGATTTCGGCTAAAAACTGATCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
257 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
*
1832 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
*
1897 TTTTCCATTTTTTCC-GAATTAAAATCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
* * * * * *
1960 AAATTTTATATCCAATGTGGTTGAGATTGAGATTTGTTTCAAT-ACATATAGATATTT-CAAGAA
131 AAATCTTATATCCAA---AG-TG-G-CTGAGATTTGGTTCGATGA-ATATAGATATTTGAAAG-A
* * * *** * * *
2023 GTCTTTGCACCAAAAATTATGCAAAATTGAGCCGGGAATTCGGAACGCGTATTT-CGCCAAAACC
188 GTCTTTGCTCCAAAAATCATGCAAAACTGAGCCGGG-CCCCGAAACGCGTTTTTGC-CCAAAAAC
* * * * * *
2087 CGTGATGGTTAGTCCAAGATTTTGGCTAAAATTTTTCAAAAACCGACCCGAAAAGTTTTCTTC-A
251 CGTGATGGTTAGTACACGATTTCGGC---------T-AAAAACTGACCCG-AAATTTTTTTTCTA
* *
2151 AGTTTT-TGCCACTAT
305 ATTTTTATGCCACAAT
* ** * * *
2166 AATCAGAAAAAATATATAATTCAAAG-TAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* * ** * * *
2230 TTTTCCATTTTTTCCCGAATTTATTTCTAATTAAATCTAAACAAGATTTAGATGCTTGCAAAAAC
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
* * *
2295 AAATACTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTG
131 AAAT-CTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTG
* * *
2360 CGCCAAAAATCATGCAAAACTGAGCCAGGAGCCCCGAAACGCGTTTTTCGCTC-AAAACCGTGAC
195 CTCCAAAAATCATGCAAAACTGAGCC-GG-GCCCCGAAACGCGTTTTT-GCCCAAAAACCGTGAT
* *
2424 GGATAGTACACGATTTCAGCTAAAAACTGACCCGAAATATTATTTTTTTTCTAATTTTTATGCCA
257 GGTTAGTACACGATTTCGGCTAAAAACTGACCCG--A-A--ATTTTTTTTCTAATTTTTATGCCA
2489 CAAT
317 CAAT
* *
2493 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGGTTTTCACGCTTCTAATACCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
*
2558 TTTTCCATTTTTTCCA-AATTAAAATCTAATTAAATCGAAACAAGGATTCT-GATGCTCGTAGAA
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAA-GATT-TAGATGCTCGTAAAA
* *
2621 ACAAATTTGTATATCCATAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTT
129 ACAAATCT-TATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTT
* *
2686 TGCTCCAAAAATCATGCGAAACTGAGCCTGGCCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGA
193 TGCTCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCG-TTTTTGCCCAAAAACCGTGA
* *
2751 TGGTTAGTACACGATTTCGGCTAAAAACTTATCCGAAATTTGTTTTTCTAATTTTTATGCCACAA
256 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTT-TTTTTCTAATTTTTATGCCACAA
2816 T
320 T
*
2817 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATAT-TT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* *
2881 TTTTCCCA-TTTTT-CAAAATTAAAATCTAATTAAATCGAAACAGGATTCT-GATGCTCGTAAAA
66 TTTT-CCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATT-TAGATGCTCGTAAAA
* * * *
2943 ACAAATTCCTATATCCAAAGTCGCTGAGATTTGATTCGATGAATATAGATACTTGAAAGAGTCTT
129 ACAAA-TCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTT
*
3008 TGCTCCAAGAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGA
193 TGCTCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCG-TTTTTGCCCAAAAACCGTGA
* * *
3073 TGGTTAGTACACGATTTCGGCTAAAAACTTATCTGAAATTTTTTTTCTAATTTTTATGCCACAAT
256 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
* **
3138 ACTCAGAAAAAATATAGAATTCATCGCTATAAAGATTGAAGTAATTTTCACGCTTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* * * * * *
3203 TTTTCCA-TTTTTCCCGAATTAAAATTTAATTAAATCGGAACATGATTCAGATGCTCGTAAAAAA
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
** * * * * * *
3267 AAAT-TTATATCCAATCTGGTTGAGATTTGTTTCAAT-ACATATAAATATTT-CAAGAAGACTTT
131 AAATCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGA-ATATAGATATTTGAAAG-AGTCTTT
* * * ** * *
3329 GCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTCCCCAAAAACCGTGATG
194 GCTCCAAAAATCATGCAAAACTGAGCCGGG-CCCCGAAACGCGTTTTTGCCCAAAAACCGTGATG
* * * ** *
3394 GTTAGTACACGATTTTGGCTAAAATTTTTCAAAAACCGACCCGAAAAGTTTTCATC-AAGTTTT-
258 GTTAGTACACGATTTCGGC---------T-AAAAACTGACCCG-AAATTTTTTTTCTAATTTTTA
3457 TGCCACAAT
312 TGCCACAAT
* ** * *
3466 AATCAGAAAAAATATATAATTCAAAG-TAATAAA-TTTGAAGGGTTTTTCACGCTTCTAATATCG
1 ACTCAGAAAAAATATATAATTCATCGCT-ATAAAGATTGAAGGGATTTTCACGCTTCTAATATCG
* * ** ** * * *
3529 TTTTTCCTTTTTTTCC-GAATTTATTTCTAATTAAATTTAAATAAGATTCAGATGCTTGTAAAAA
65 TTTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAA
* * *
3593 CAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
130 CAAAT-CTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
* * * *
3658 ACGCCATAAATCATGCAAAACTGAGCCAGGGTCCCGAAACGCGTTTTTAGCCC-AAAACCGTGAT
194 GCTCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCGTTTTT-GCCCAAAAACCGTGAT
* * *
3722 TGATAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTAATTTTTATGCCACAAT
257 GGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA-TTTTTTTTCTAATTTTTATGCCACAAT
* * *
3787 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGGTTTTCACACCTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
*
3852 TTTTCCATTTTTTCCA-AATTAAAATATAATTAAATCGAAACAAGATTCT-GATGCTCGTAAAAA
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATT-TAGATGCTCGTAAAAA
*
3915 -AAATTCTTATATCCAAAGTGGCTGAGATTTGATTCGATGAATATAGATATTTGAAAGAGTCTTT
130 CAAA-TCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
* * * * ** **
3979 CCTCCAAAAAAACATGCAAAACTGAGTCGGGGCCCCGAAAAGTACACGATTTCGGCTAAAAACTG
194 GCTCC-AAAAATCATGCAAAACTGAG-CCGGGCCCCG--AA--ACGCG-TTTTTGCCCAAAA---
** ** ** * *** ** * * * ***** * *
4044 ACCCGAAATTTTTTTTTCAATTTTTATGC-CACAA-T-ACTCAGAAA--AAACATATAA--TTCA
249 A-CCGTGATGGTTAGTACACGATTTCGGCTAAAAACTGAC-CCGAAATTTTTTTTCTAATTTTTA
* *
4102 TCGCTATAA-
312 T-GCCACAAT
* * *** * * ******* ** *
4111 AGAT-TG-AAGGGT-T-T--TTCA-CGCTTCTAATACCGTTTTTCCATTTTTTC-CGAAT-TAAA
1 A-CTCAGAAAAAATATATAATTCATCGC-TATAA-A--GATTGAAGGGATTTTCACGCTTCTAAT
** ** ******* * ** * *
4167 ATC-TAATTAAATCGAAAAAAG-ATTCAAATTCTCGTAAAAAAAAT-TATATCCAATG-TGGTTG
61 ATCGTTTTTCCATTTTTTCCAGAATT-AAA--ATC-T-AATTAAATCGA-A-ACAA-GAT--TT-
* * * * * * * * * * ****
4228 AGATTTG-T-TTCAATACATATATATATTTCAAGAAGTCTTTGCACTAAAAATTAT-GCAAAATT
115 AGA--TGCTCGTAAAAACAAATCT-TATATCCA-AAG----TG-GCT-GAGATT-TGGTTCGA-T
* *** ** * * * * * * *** *
4290 GAGTCGGGA-ATCCGGAACGCGT-TTTTCGCCAAAAA-C---C----GTGA---TGG-TTAG-TA
168 GAATATAGATAT-TTGAAAGAGTCTTTGCTCCAAAAATCATGCAAAACTGAGCCGGGCCCCGAAA
* * * * * * * ** * ** *** *
4340 CACGATTTTG-ACTAAAA---T--T-TTTCA-AAAACCGA---C--CCGAAAAGTGTTCATCAAG
232 CGCGTTTTTGCCCAAAAACCGTGATGGTT-AGTACA-CGATTTCGGCTAAAAACTGACCCGAAAT
** * ** * ** *
4392 TTTTTGCCACAATAATCA-GAAAAAAT
295 TTTTTTTC-TAATTTTTATGCCACAAT
* * ** * ** * ** * *
4418 A-T-ATAATCCAAACTA-A-AA-AAATTG--A-AGGGTTTTTCA-CGCTT---------CTAATA
1 ACTCAGAA---AAAATATATAATTCATCGCTATAAAG-ATTGAAGGGATTTTCACGCTTCTAATA
* ** ** * *
4465 TCGTTTTTCCAATTTTTTCC-GAATTTATTTCTAATTAAATTTAAATAAGATTTAGATGCTTGTA
62 TCGTTTTTCC-ATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTA
* ** *
4529 AAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTCCAAGGAGT
126 AAAACAAAT-CTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGT
* * ** *
4594 CTTTGCGCTAAAAATCATGCAAATTTGAACCGGGGCCCCGAAACGCGTTTTTAGCCC-AAAACCG
190 CTTTGCTCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCGTTTTT-GCCCAAAAACCG
* * *
4658 TGATGGTTAGTACACGATTTCAGCTAAAAACTGGCCCGAATTTTTTTTTTCTAATTTTTATGCCA
253 TGATGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAA-ATTTTTTTTCTAATTTTTATGCCA
4723 CAAT
317 CAAT
* *
4727 ACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAATGGG-TTTTCACGCTTCTAATATTG
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAA-GGGATTTTCACGCTTCTAATATCG
*
4791 TTTTCCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTCT-GATGCTCGTAAAA
65 TTTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATT-TAGATGCTCGTAAAA
*
4855 ACAAATTCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTT
129 ACAAA-TCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTT
*
4920 TGCTCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGA
193 TGCTCCAAAAATCATGCAAAACTGAG-CCGGGCCCCGAAACGCG-TTTTTGCCCAAAAACCGTGA
*
4985 TGGTTAGTACACGATTTCGGATAAAAACTGACCCGAAATGTTTTTTTCCTAATTTTTATGCCACA
256 TGGTTAGTACACGATTTCGGCTAAAAACTGACCCGAAAT-TTTTTTT-CTAATTTTTATGCCACA
5050 AT
319 AT
* * *
5052 ACTCAGAAAAAATATATAGTTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCAT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* * * *
5117 TTTTCCA-TTTTTCCCGAATTAAAATCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAAA
66 TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
* * * * *
5181 AAATTTTATATCCAATGTGGTTGAGATTTGTTTC-A-GTACATATATATA-TT-ACAAGAAGTCT
131 AAATCTTATATCCAAAGTGGCTGAGATTTGGTTCGATG-A-ATATAGATATTTGA-AAG-AGTCT
* * * ** * * *
5242 TTGCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAATGCGTTTTT-CGCAAAAACCGTGA
192 TTGCTCCAAAAATCATGCAAAACTGAGCCGGG-CCCCGAAACGCGTTTTTGCCCAAAAACCGTGA
* * * * *** *
5306 TTGTTTA-TACACGATTTTGGCTTAAATTTTTCAAAAACCGACCCGAAAACTTTTCAAC-AAGTT
256 -TGGTTAGTACACGATTTCGGC---------T-AAAAACTGACCCG-AAATTTTTTTTCTAATTT
*
5369 TTCT-CCACAAT
309 TTATGCCACAAT
* ** * * * * * *
5380 AATCAGAAAAAATATATAATTCAAAG-GAAAAAAAATGACGGGTTTTTCACGACTTCTAATATCG
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACG-CTTCTAATATCG
* * ** * * * * *
5444 TTTTTCAAATTTTTTTCC-GAATTTATTTCTAATTAAATCTAAATACGATTTAGATACTTGT-AA
65 TTTTTC-CA-TTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAA
* * * * * *
5507 AACAAATCCTTATATTCAATGTGGCTGAGATTTGATTCAATGAATATAGATATTTCAAGGAGTCT
128 AACAAAT-CTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCT
* * *
5572 TTGC-GCAAAAGATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCC-AAACCCGT
192 TTGCTCCAAAA-ATCATGCAAAACTGAG-CCGGGCCCCGAAACGCGTTTTT-GCCCAAAAACCGT
* * * * * *
5635 GATGTTTTTAATACACGATCTCGACTAAAAACTGACCCGAAATTTTTTTTTCTTATTTGTATGCC
254 GATG--GTTAGTACACGATTTCGGCTAAAAACTGACCCGAAA-TTTTTTTTCTAATTTTTATGCC
5700 ACAAT
316 ACAAT
*
5705 ACTCAGAAAAAATATATAATTCAAT-GCTATAAAGATTGAAAGGG-TTTTCACGCTTCAAATATC
1 ACTCAGAAAAAATATATAATTC-ATCGCTATAAAGATTG-AAGGGATTTTCACGCTTCTAATATC
* * *
5768 GTTTTTCCATTTTTTCC-GAATTAAAATCTAATTAAATCGAAACAAGAATAAGAAGCTCGTAAAA
64 GTTTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAA
* * * * * * * * *
5832 AAAAATCTTATATCCAATGTGGCTGAGATTTGTTTCAATTAATATAGTTATTTCAAGGACTCTTT
129 ACAAATCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
* * * *** * *
5897 GCACCAAAAATTATGCAAAATTGAGCCAGGAATCCGGAACGCGTTTTTAG-CCAAAAACCGTGAA
194 GCTCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGAAACGCGTTTTT-GCCCAAAAACCGTGAT
*
5961 GGTTAGTACACGATTTTGGCTAAAA
257 GGTTAGTACACGATTTCGGCTAAAA
5986 CTTTGCAAAA
Statistics
Matches: 3569, Mismatches: 642, Indels: 534
0.75 0.14 0.11
Matches are distributed among these distances:
282 12 0.00
283 19 0.01
284 3 0.00
285 2 0.00
287 1 0.00
288 2 0.00
289 3 0.00
290 17 0.00
291 6 0.00
292 1 0.00
293 3 0.00
294 7 0.00
295 5 0.00
296 3 0.00
297 14 0.00
298 10 0.00
299 6 0.00
301 2 0.00
302 3 0.00
303 10 0.00
304 7 0.00
305 9 0.00
306 9 0.00
307 2 0.00
308 22 0.01
309 15 0.00
310 4 0.00
311 6 0.00
312 1 0.00
313 4 0.00
314 4 0.00
315 4 0.00
316 3 0.00
317 5 0.00
318 6 0.00
319 81 0.02
320 100 0.03
321 255 0.07
322 465 0.13
323 732 0.21
324 272 0.08
325 182 0.05
326 102 0.03
327 179 0.05
328 293 0.08
329 160 0.04
330 191 0.05
331 100 0.03
332 15 0.00
333 62 0.02
334 76 0.02
335 28 0.01
336 33 0.01
337 13 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (320 bp):
ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
TTTTCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
AAATCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTGC
TCCAAAAATCATGCAAAACTGAGCCGGGCCCCGAAACGCGTTTTTGCCCAAAAACCGTGATGGTT
AGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
Found at i:3024 original size:322 final size:322
Alignment explanation
Indices: 1186--4018 Score: 3506
Period size: 322 Copynumber: 8.7 Consensus size: 322
1176 TTTTTATGCC
* * * *
1186 ACTCAGAAAAAATATAAAATTCATTGCAATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* **
1251 TTTCCCATTTTTTTTAGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAC
66 TTTTCCA-TTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAC
*
1316 CAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTG
130 AAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTG
* * *
1381 CTCCAAAAATCAGGCACAACTGAGCCGGAGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATG
195 CTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATG
1446 GTTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
260 GTTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
* *
1509 ACTCAGAAAAAATATATAAATAATCGCTATAAAGATTGAAGGGGATTTTCACGCTTCTAATATCG
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAA-GGGATTTTCACGCTTCTAATATCG
* ** * * *
1574 TTTTTCCA-TTTTTCCAGAATTTATTTCTAATTAAATCTAAACAAGATT-TACATGCTTGTAAAA
65 TTTTTCCATTTTTTCC-GAATTAAAATCTAATTAAATCGAAACAAGATTCT-GATGCTCGTAAAA
1637 ACAAA-TCGTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCT
128 ACAAATTC-TTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCT
*** * *
1701 TTGCTCCAAAAATCATGCAAAACTGAGCCTTAGCCCCGAAACGCGTTTCTTGCCCAAAAACCGTT
192 TTGCTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTG
* * *
1766 ATGGTTACTACACGATTTCGGCTAAAAACTGATCCGAAATTTTTTTTCTAATTTTTATGCCACAA
257 ATGGTTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTTTTTTTCTAATTTTTATGCCACAA
1831 T
322 T
*
1832 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
*
1897 TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-A
66 TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
* * * * *
1961 AATT-TTATATCCAATGTGGTTGAGATTGAGATTTGTTTCAAT-ACATATAGATATTT-CAAGAA
131 AATTCTTATATCCAA---AG-TG-G-CTGAGATTTGGTTCGATGA-ATATAGATATTTGAAAG-A
* * * **** * * * *
2023 GTCTTTGCACCAAAAATTATGCAAAATTGAGCCGGGAATTCGGAACGCGTATTTCG-CCAAAACC
188 GTCTTTGCTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAAC
* * * ** * *
2087 CGTGATGGTTAGTCCAAGATTTTGGCTAAAATTTTTCAAAAACCGACCCGAAAAGTTTTCTTC-A
253 CGTGATGGTTAGTACACGATTTCGGC---------T-AAAAACTTACCCG-AAATTTTTTTTCTA
* *
2151 AGTTTT-TGCCACTAT
307 ATTTTTATGCCACAAT
* ** * * *
2166 AATCAGAAAAAATATATAATTCAAAG-TAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* ** * * *
2230 TTTTCCATTTTTTCCCGAATTTATTTCTAATTAAATCTAAACAAGATT-TAGATGCTTGCAAAAA
66 TTTTCCATTTTTT-CCGAATTAAAATCTAATTAAATCGAAACAAGATTCT-GATGCTCGTAAAAA
* * * *
2294 CAAATACTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
129 CAAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
* * * *
2359 GCGCCAAAAATCATGCAAAACTGAGCCAGGAGCCCCGAAACGCGTTTTTCGCTC-AAAACCGTGA
194 GCTCCAAAAATCATGCAAAACTGAGCC-GGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGA
* * * *
2423 CGGATAGTACACGATTTCAGCTAAAAACTGACCCGAAATATTATTTTTTTTCTAATTTTTATGCC
258 TGGTTAGTACACGATTTCGGCTAAAAACTTACCCG--A-A--ATTTTTTTTCTAATTTTTATGCC
2488 ACAAT
318 ACAAT
* *
2493 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGGTTTTCACGCTTCTAATACCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* *
2558 TTTTCCATTTTTTCCAAATTAAAATCTAATTAAATCGAAACAAGGATTCTGATGCTCGTAGAAAC
66 TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAA-GATTCTGATGCTCGTAAAAAC
*
2623 AAATT-TGTATATCCATAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
130 AAATTCT-TATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTT
* * *
2687 GCTCCAAAAATCATGCGAAACTGAGCCTGGCCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGAT
194 GCTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGAT
*
2752 GGTTAGTACACGATTTCGGCTAAAAACTTATCCGAAATTTGTTTTTCTAATTTTTATGCCACAAT
259 GGTTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTT-TTTTTCTAATTTTTATGCCACAAT
*
2817 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATAT-TT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
** *
2881 TTTTCCCA-TTTTTCAAAATTAAAATCTAATTAAATCGAAACAGGATTCTGATGCTCGTAAAAAC
66 TTTT-CCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAC
* * * *
2945 AAATTCCTATATCCAAAGTCGCTGAGATTTGATTCGATGAATATAGATACTTGAAAGAGTCTTTG
130 AAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTG
*
3010 CTCCAAGAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATG
195 CTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATG
* *
3075 GTTAGTACACGATTTCGGCTAAAAACTTATCTGAAATTTTTTTTCTAATTTTTATGCCACAAT
260 GTTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
* **
3138 ACTCAGAAAAAATATAGAATTCATCGCTATAAAGATTGAAGTAATTTTCACGCTTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* * * * *
3203 TTTTCCATTTTTCCCGAATTAAAATTTAATTAAATCGGAACATGATTCAGATGCTCGTAAAAA-A
66 TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
* ** * * * * * *
3267 AAAT-TTATATCCAATCTGGTTGAGATTTGTTTCAAT-ACATATAAATATTT-CAAGAAGACTTT
131 AATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGA-ATATAGATATTTGAAAG-AGTCTTT
* * * *** * *
3329 GCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCG-TTTTTCCCCAAAAACCGTGAT
194 GCTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGAT
* ** * ** *
3393 GGTTAGTACACGATTTTGGCTAAAATTTTTCAAAAACCGACCCGAAAAGTTTTCATC-AAGTTTT
259 GGTTAGTACACGATTTCGGC---------T-AAAAACTTACCCG-AAATTTTTTTTCTAATTTTT
3457 -TGCCACAAT
313 ATGCCACAAT
* ** * *
3466 AATCAGAAAAAATATATAATTCAAAG-TAATAAA-TTTGAAGGGTTTTTCACGCTTCTAATATCG
1 ACTCAGAAAAAATATATAATTCATCGCT-ATAAAGATTGAAGGGATTTTCACGCTTCTAATATCG
* * ** ** * * *
3529 TTTTTCCTTTTTTTCCGAATTTATTTCTAATTAAATTTAAATAAGATTCAGATGCTTGTAAAAAC
65 TTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAC
* * * * *
3594 AAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTA
130 AAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTG
* * * * * *
3659 CGCCATAAATCATGCAAAACTGAGCCAGGGTCCCGAAACGCGTTTTTAGCCC-AAAACCGTGATT
195 CTCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATG
* * *
3723 GATAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTAATTTTTATGCCACAAT
260 GTTAGTACACGATTTCGGCTAAAAACTTACCCGAAA-TTTTTTTTCTAATTTTTATGCCACAAT
* * *
3787 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGGTTTTCACACCTCTAATATCGT
1 ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
* *
3852 TTTTCCATTTTTTCCAAATTAAAATATAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAA-A
66 TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
* *
3916 AATTCTTATATCCAAAGTGGCTGAGATTTGATTCGATGAATATAGATATTTGAAAGAGTCTTTCC
131 AATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTGC
* *
3981 TCCAAAAAAACATGCAAAACTGAGTCGGGGCCCCGAAA
196 TCC-AAAAATCATGCAAAACTGAGCCGGGGCCCCGAAA
4019 AGTACACGAT
Statistics
Matches: 2155, Mismatches: 280, Indels: 151
0.83 0.11 0.06
Matches are distributed among these distances:
318 3 0.00
319 61 0.03
320 93 0.04
321 204 0.09
322 423 0.20
323 345 0.16
324 119 0.06
325 42 0.02
326 76 0.04
327 157 0.07
328 225 0.10
329 121 0.06
330 76 0.04
331 44 0.02
332 3 0.00
333 48 0.02
334 74 0.03
335 21 0.01
336 20 0.01
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (322 bp):
ACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACA
AATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTGC
TCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATGG
TTAGTACACGATTTCGGCTAAAAACTTACCCGAAATTTTTTTTCTAATTTTTATGCCACAAT
Found at i:3656 original size:649 final size:650
Alignment explanation
Indices: 504--4018 Score: 4161
Period size: 649 Copynumber: 5.4 Consensus size: 650
494 TGATTTTTGT
*
504 TAGTACACGATTTAAGCTAAAAACTGACCCGAAATTTTTTTTCTTCTAATTTTTATGCCACAATA
1 TAGTACACGATTTCAGCTAAAAACTGACCCGAAA--TTTTTT-TTCTAATTTTTATGCCACAATA
*
569 CTCAGAAAAAAAAATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGT
63 CTCAG-AAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGT
*
634 TTTTCCA-TTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTAATGCTCGTAAAAACA
127 TTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAA-A
* * * *
698 AATTCTTATATCCAAAGTGGCTGAGATTTGGTTCAATAAAAATAGATATTTGAAAGAGTCTTTGC
191 AATT-TTATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTTTGC
* * * ** * *
763 TCCAAAAATAATGCAAAACTGAGTCGGGGTCCGGAAACGCGTTTTTTAGCCC-AAAACCGTGATG
255 ACCAAAAATCATGCAAAACTGAGCCGGGAACCCGAAACGCGTTTTTT-CCCCAAAAACCGTGATG
* * * ** * *
827 TGATAGTACACGATTTCAGC--------TAAAAACTGACCCG--ATTTTTTATTTCTAATTTTTA
319 -GTTAGTACACGATTTCGGCTAAAATTTTAAAAACCGACCCGAAAAGTTTT-CTTCTAAGTTTTA
* * * *
882 TGCCACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAAGGGGTTTTCACACTTC
382 TGCCACAATAATCAGAAAAAATATATAATTCAAAGCTATAAAGATTGAAGGGATTTTCACGCTTC
* * * * * * *
947 TAATATCGTTTTTCCATTTTTTTCCAAATTAAAATT-TGATTAAATCGAAACAAGATTCTGATGC
447 TAATATCGTTTTTCC-TATTTTTCCGAATT-TATTTCTAATTAAATCTAAACAAGATTCAGATGC
* * *
1011 TCGTAAAAACAAATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAA
510 TTGTAAAAACAAATCCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAA
* * * *
1076 ACAGTCTTTGCTCCAAAAATCATTCAAAACTGAGACAGG-GCCCCGAAA-------------C--
575 AGAGTCTTTGCGCCAAAAATCATGCAAAACTGAG-CCGGAGCCCCGAAACGCGTTTTTTGCCCAA
1125 -A-CGT--T-G-
639 AACCGTGATGGA
* * * * * *
1131 TA-T--ACGATTGCAGCTAAAACCTTAACCGAAAATATTTATTCCTAATTTTTATG-C-C---AC
1 TAGTACACGATTTCAGCTAAAAACTGACCCG-AAAT-TTTTTTTCTAATTTTTATGCCACAATAC
* * *
1188 TCAGAAAAAATATAAAATTCATTGCAATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTT
64 TCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTT
* ** *
1253 TCCCATTTTTTTTAGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACCA
129 TTCCA-TTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAA-AA
* * * *
1318 ATTCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTGCT
192 ATT-TTATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTTTGCA
* * * *
1383 CCAAAAATCAGGCACAACTGAGCC-GGAGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATGG
256 CCAAAAATCATGCAAAACTGAGCCGGGA-ACCCGAAACGCGTTTTTTCCCCAAAAACCGTGATGG
** * * *
1447 TTAGTACACGATTTCGGC--------TAAAAACTTACCCG-AAATTTTTTTTCTAATTTTTATGC
320 TTAGTACACGATTTCGGCTAAAATTTTAAAAACCGACCCGAAAAGTTTTCTTCTAAGTTTTATGC
* * *
1503 CACAATACTCAGAAAAAATATATAAAT-AATCGCTATAAAGATTGAAGGGGATTTTCACGCTTCT
385 CACAATAATCAGAAAAAATATATAATTCAA-AGCTATAAAGATTGAA-GGGATTTTCACGCTTCT
* *
1567 AATATCGTTTTTCC-ATTTTTCCAGAATTTATTTCTAATTAAATCTAAACAAGATTTACATGCTT
448 AATATCGTTTTTCCTATTTTTCC-GAATTTATTTCTAATTAAATCTAAACAAGATTCAGATGCTT
* *
1631 GTAAAAACAAATCGTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAG
512 GTAAAAACAAATCCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAG
* ** *
1696 AGTCTTTGCTCCAAAAATCATGCAAAACTGAGCCTTAGCCCCGAAACGCGTTTCTTGCCCAAAAA
577 AGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCGAAACGCGTTTTTTGCCC-AAAA
* *
1761 CCGTTATGGT
641 CCGTGATGGA
* * *
1771 TACTACACGATTTCGGCTAAAAACTGATCCGAAATTTTTTTTCTAATTTTTATGCCACAATACTC
1 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAATACTC
1836 AGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTTTT
66 AGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTTTT
*
1901 CCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAAAAATTT
131 CCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAAAATTT
* *
1966 TATATCCAATGTGGTTGAGATTGAGATTTGTTTCAAT-ACATATAGATATTTC-AAGAAGTCTTT
196 TATATCCAA--T-G-TG-G-CTGAGATTTGGTTCAATGA-ATATAGATATTTCAAAG-AGTCTTT
* * ** * * * *
2029 GCACCAAAAATTATGCAAAATTGAGCCGGGAATTCGGAACGCG-TATTTCGCCAAAACCCGTGAT
253 GCACCAAAAATCATGCAAAACTGAGCCGGGAACCCGAAACGCGTTTTTTCCCCAAAAACCGTGAT
* * *
2093 GGTTAGTCCAAGATTTTGGCTAAAATTTTTCAAAAACCGACCCGAAAAGTTTTCTTC-AAGTTTT
318 GGTTAGTACACGATTTCGGCTAAAA-TTTT-AAAAACCGACCCGAAAAGTTTTCTTCTAAGTTTT
* * * *
2157 -TGCCACTATAATCAGAAAAAATATATAATTCAAAG-TAAAAAAATTGAAGGGTTTTTCACGCTT
381 ATGCCACAATAATCAGAAAAAATATATAATTCAAAGCTATAAAGATTGAAGGGATTTTCACGCTT
*
2220 CTAATATCGTTTTTCC-ATTTTTTCCCGAATTTATTTCTAATTAAATCTAAACAAGATTTAGATG
446 CTAATATCGTTTTTCCTA-TTTTT-CCGAATTTATTTCTAATTAAATCTAAACAAGATTCAGATG
* * *
2284 CTTGCAAAAACAAATACTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCA
509 CTTGTAAAAACAAATCCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCA
* * *
2349 AGGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCAGGAGCCCCGAAACGCGTTTTTCGCTCA
574 AAGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCC-GGAGCCCCGAAACGCGTTTTTTGCCCA
*
2414 AAACCGTGACGGA
638 AAACCGTGATGGA
2427 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATATTATTTTTTTTCTAATTTTTATGCCACAA
1 TAGTACACGATTTCAGCTAAAAACTGACCCG--A-A--ATTTTTTTTCTAATTTTTATGCCACAA
*
2492 TACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGGTTTTCACGCTTCTAATACCG
61 TACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCG
*
2557 TTTTTCCATTTTTTCCAAATTAAAATCTAATTAAATCGAAACAAGGATTCTGATGCTCGTAGAAA
126 TTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAA-GATTCTGATGCTCGTA-AAA
* * *
2622 CAAATTTGTATATCC-ATAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTT
189 AAAATTT-TATATCCAAT-GTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTT
* * * ** *
2686 TGCTCCAAAAATCATGCGAAACTGAGCCTGGCCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGA
252 TGCACCAAAAATCATGCAAAACTGAGCCGGGAACCCGAAACGCGTTTTTTCCCCAAAAACCGTGA
** * * * *
2751 TGGTTAGTACACGATTTCGGC--------TAAAAACTTATCCG-AAATTTGTTTTTCTAATTTTT
317 TGGTTAGTACACGATTTCGGCTAAAATTTTAAAAACCGACCCGAAAAGTT-TTCTTCTAAGTTTT
* **
2807 ATGCCACAATACTCAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTT
381 ATGCCACAATAATCAGAAAAAATATATAATTCAAAGCTATAAAGATTGAAGGGATTTTCACGCTT
* * ** * ** * * *
2872 CTAATAT-TTTTTTCCCATTTTTCAAAATTAAAATCTAATTAAATCGAAACAGGATTCTGATGCT
446 CTAATATCGTTTTTCCTATTTTTCCGAATTTATTTCTAATTAAATCTAAACAAGATTCAGATGCT
* * * * *
2936 CGTAAAAACAAATTCC-TATATCCAAAGTCGCTGAGATTTGATTCGATGAATATAGATACTTGAA
511 TGTAAAAACAAA-TCCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAA
* * *
3000 AGAGTCTTTGCTCCAAGAATCATGCAAAACTGAGCCGGGGCCCCGAAACGCGTTTTTTGCCCAAA
575 AGAGTCTTTGCGCCAAAAATCATGCAAAACTGAGCCGGAGCCCCGAAACGCGTTTTTTGCCC-AA
*
3065 AACCGTGATGGT
639 AACCGTGATGGA
* * * *
3077 TAGTACACGATTTCGGCTAAAAACTTATCTGAAATTTTTTTTCTAATTTTTATGCCACAATACTC
1 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAATACTC
* ** *
3142 AGAAAAAATATAGAATTCATCGCTATAAAGATTGAAGTAATTTTCACGCTTCTAATATCGTTTTT
66 AGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTTTT
* * * * * *
3207 CCATTTTTCCCGAATTAAAATTTAATTAAATCGGAACATGATTCAGATGCTCGTAAAAAAAAATT
131 CCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAAAATTT
* * * * *
3272 TATATCCAATCTGGTTGAGATTTGTTTCAAT-ACATATAAATATTTC-AAGAAGACTTTGCACCA
196 TATATCCAATGTGGCTGAGATTTGGTTCAATGA-ATATAGATATTTCAAAG-AGTCTTTGCACCA
* * * *
3335 AAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCG-TTTTTCCCCAAAAACCGTGATGGTTAG
259 AAAATCATGCAAAACTGAGCCGGGAACCCGAAACGCGTTTTTTCCCCAAAAACCGTGATGGTTAG
* *
3399 TACACGATTTTGGCTAAAATTTTTCAAAAACCGACCCGAAAAGTTTTCATC-AAGTTTT-TGCCA
324 TACACGATTTCGGCTAAAA-TTTT-AAAAACCGACCCGAAAAGTTTTCTTCTAAGTTTTATGCCA
* *
3462 CAATAATCAGAAAAAATATATAATTCAAAG-TAATAAA-TTTGAAGGGTTTTTCACGCTTCTAAT
387 CAATAATCAGAAAAAATATATAATTCAAAGCT-ATAAAGATTGAAGGGATTTTCACGCTTCTAAT
* * *
3525 ATCGTTTTTCCTTTTTTTCCGAATTTATTTCTAATTAAATTTAAATAAGATTCAGATGCTTGTAA
451 ATCGTTTTTCCTATTTTTCCGAATTTATTTCTAATTAAATCTAAACAAGATTCAGATGCTTGTAA
* *
3590 AAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTC
516 AAACAAATCCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTC
* * * *
3655 TTTACGCCATAAATCATGCAAAACTGAGCCAGG-GTCCCGAAACGCGTTTTTAGCCCAAAACCGT
581 TTTGCGCCAAAAATCATGCAAAACTGAGCC-GGAGCCCCGAAACGCGTTTTTTGCCCAAAACCGT
*
3719 GATTGA
645 GATGGA
3725 TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTAATTTTTATGCCACAATACT
1 TAGTACACGATTTCAGCTAAAAACTGACCCGAAA-TTTTTTTTCTAATTTTTATGCCACAATACT
* * * *
3790 CAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGGTTTTCACACCTCTAATATCGTTTT
65 CAGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTTT
* *
3855 TCCATTTTTTCCAAATTAAAATATAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAAAATT
130 TCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAAAATT
* * * * * *
3920 CTTATATCCAAAGTGGCTGAGATTTGATTCGATGAATATAGATATTTGAAAGAGTCTTTCCTCCA
195 -TTATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTTTGCACC-
* * **
3985 AAAAAACATGCAAAACTGAGTCGGGGCCCCGAAA
258 AAAAATCATGCAAAACTGAGCCGGGAACCCGAAA
4019 AGTACACGAT
Statistics
Matches: 2489, Mismatches: 292, Indels: 190
0.84 0.10 0.06
Matches are distributed among these distances:
617 74 0.03
618 230 0.09
619 199 0.08
621 1 0.00
622 1 0.00
623 14 0.01
624 24 0.01
625 3 0.00
626 1 0.00
627 2 0.00
631 1 0.00
635 1 0.00
636 3 0.00
638 1 0.00
639 1 0.00
640 2 0.00
641 61 0.02
642 80 0.03
643 41 0.02
644 19 0.01
645 179 0.07
646 69 0.03
647 3 0.00
648 117 0.05
649 435 0.17
650 224 0.09
651 89 0.04
652 38 0.02
655 31 0.01
656 187 0.08
657 52 0.02
658 86 0.03
659 50 0.02
660 2 0.00
661 136 0.05
662 15 0.01
663 10 0.00
664 7 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (650 bp):
TAGTACACGATTTCAGCTAAAAACTGACCCGAAATTTTTTTTCTAATTTTTATGCCACAATACTC
AGAAAAAATATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCGTTTTT
CCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAAAAATTT
TATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAGTCTTTGCACCAAA
AATCATGCAAAACTGAGCCGGGAACCCGAAACGCGTTTTTTCCCCAAAAACCGTGATGGTTAGTA
CACGATTTCGGCTAAAATTTTAAAAACCGACCCGAAAAGTTTTCTTCTAAGTTTTATGCCACAAT
AATCAGAAAAAATATATAATTCAAAGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATATCGT
TTTTCCTATTTTTCCGAATTTATTTCTAATTAAATCTAAACAAGATTCAGATGCTTGTAAAAACA
AATCCTTATATCCAAAGTGGCTGAGATTTGGTTCGATGAATATAGATATTTCAAAGAGTCTTTGC
GCCAAAAATCATGCAAAACTGAGCCGGAGCCCCGAAACGCGTTTTTTGCCCAAAACCGTGATGGA
Found at i:5397 original size:653 final size:645
Alignment explanation
Indices: 4065--6007 Score: 2194
Period size: 653 Copynumber: 3.0 Consensus size: 645
4055 TTTTTTCAAT
* *
4065 TTTTATGCCACAATACTCAGAAAAAACATATAATTCATCGCTATAAAGATTGAAGGGTTTTTCAC
1 TTTTATGCCACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAAGGGTTTTTCAC
* * **
4130 GCTTCTAATACCGTTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCAAA
66 GCTTCTAATATCGTTTTCCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCTGA
* * * *
4195 TTCTCGTAAAAA-AAA--TTATATCCAATGTGGTTGAGATTTGTTTCAAT-ACATATATATATTT
131 TACTCGTAAAAACAAATCTTATATCCAATGTGGCTGAGATTTGATTCAATGA-ATATAGATATTT
* * * * *** * *
4256 CAAGAAGTCTTTGCACTAAAAATTATGCAAAATTGAGTCGGGAATCCGGAACGCGTTTTTCG-CC
195 AAAG-AGTCTTTGC-CCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCC
* * * *
4320 AAAAACCGTGATGGTTAGTACACGATTTTGACTAAAATTTTTCAAAAACCGACCCGAAAAGTGTT
258 AAAAACCGTGATGGTTAGTACACGA-TTT--C---GA---TT-AAAAACTGACCCGAAATGTTTT
** * * * ** * *
4385 CATC-AAGTTTT-TGCCACAATAATCAGAAAAAATATATAATCCAAACTAAAAAAATTGAAGGGT
313 TTTCTAATTTTTATGCCACAATACTCAGAAAAAATATATAATTCATGCTATAAAGATTGAAGGG-
* ** ** *
4448 TTTTCACGCTTCTAATATCGTTTTTCCAATTTTTTCCGAATTTATTTCTAATTAAATTTAAATAA
377 TTTTCACGCTTCTAATATCGTTTTTCC-ATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAA
* * * *
4513 GATTTAGATGCTTGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTC-GATGAATA
441 GA-TTAAATGCTCGTAAAAAAAAAT-CTTATATCCAATGTGGCTGAGATTTGTTTCAG-T-AATA
* * * * * * * *** *
4577 TAGATATTCCAAGGAGTCTTTGCGCTAAAAATCATGCAAATTTGAACCGGGGCCCCGAAACGCGT
502 TATATATTACAAGGAGTCTTTGCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCGT
* ** * *
4642 TTTTAGCCCAAAACCGTGATGGTTAGTACACGA-TTT--C---A-GCT-AAAAACTGGCCCGAAT
567 TTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTGGCTAAATTTTCAAAAACTGACCCGAAA
** *** *
4699 TTTTTTTTTCTAAT
632 ACTTTTCAACTAAG
4713 TTTTATGCCACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAATGGG-TTTTCA
1 TTTTATGCCACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAA-GGGTTTTTCA
* *
4777 CGCTTCTAATATTGTTTTCCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTCT
65 CGCTTCTAATATCGTTTTCCCATTTTTTCC-GAATTAAAATCTAATTAAATCGAAAAAAGATTCT
* * *
4842 GATGCTCGTAAAAACAAATTCTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATAT
129 GATACTCGTAAAAACAAA-TCTTATATCCAATGTGGCTGAGATTTGATTCAATGAATATAGATAT
*
4907 TTGAAAGAGTCTTTGCTCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTTGC
193 TT-AAAGAGTCTTTGC-CCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGC
4972 CCAAAAACCGTGATGGTTAGTACACGATTTCGGA-TAAAAACTGACCCGAAATGTTTTTTTCCTA
256 CCAAAAACCGTGATGGTTAGTACACGATTTC-GATTAAAAACTGACCCGAAATGTTTTTTT-CTA
*
5036 ATTTTTATGCCACAATACTCAGAAAAAATATATAGTTCATCGCTATAAAGATTGAAGGGATTTTC
319 ATTTTTATGCCACAATACTCAGAAAAAATATATAATTCAT-GCTATAAAGATTGAAGGG-TTTTC
* * *
5101 ACGCTTCTAATACCATTTTTCCATTTTTCCCGAATTAAAATCTAATTAAATCGAAACAAGATTCA
382 ACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATT-A
* *
5166 AATGCTCGTAAAAAAAAATTTTATATCCAATGTGGTTGAGATTTGTTTCAGTACATATATATATT
446 AATGCTCGTAAAAAAAAATCTTATATCCAATGTGGCTGAGATTTGTTTCAGTA-ATATATATATT
* * *
5231 ACAAGAAGTCTTTGCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAATGCGTTTTTCG-C
510 ACAAGGAGTCTTTGCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTAGCC
* *
5295 AAAAACCGTGATTGTTTA-TACACGATTTTGGCTTAAATTTTTCAAAAACCGACCCGAAAACTTT
575 AAAAACCGTGA-TGGTTAGTACACGATTTTGGC-TAAA-TTTTCAAAAACTGACCCGAAAACTTT
5359 TCAAC-AAG
637 TCAACTAAG
* * * * * * * *
5367 TTTTCT-CCACAATAATCAGAAAAAATATATAATTCAAAG-GAAAAAAAATGACGGGTTTTTCAC
1 TTTTATGCCACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAAGGGTTTTTCAC
** * ** * * *
5430 GACTTCTAATATCGTTTTTCAAATTTTTTTCCGAATTTATTTCTAATTAAATCTAAATACGATT-
66 G-CTTCTAATATCG-TTTTCCCA-TTTTTTCCGAATTAAAATCTAATTAAATCGAAAAAAGATTC
* *
5494 TAGATACTTGT-AAAACAAATCCTTATATTCAATGTGGCTGAGATTTGATTCAATGAATATAGAT
128 T-GATACTCGTAAAAACAAAT-CTTATATCCAATGTGGCTGAGATTTGATTCAATGAATATAGAT
* *
5558 ATTTCAAGGAGTCTTTGCGCAAAAGATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTA
191 ATTT-AAAGAGTCTTTGCCCAAAA-ATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTA
* * * * * *
5623 GCCC-AAACCCGTGATGTTTTTAATACACGATCTCGACTAAAAACTGACCCGAAATTTTTTTTTC
254 GCCCAAAAACCGTGATG--GTTAGTACACGATTTCGATTAAAAACTGACCCGAAATGTTTTTTTC
* *
5687 TTATTTGTATGCCACAATACTCAGAAAAAATATATAATTCAATGCTATAAAGATTGAAAGGGTTT
317 TAATTTTTATGCCACAATACTCAGAAAAAATATATAATTC-ATGCTATAAAGATTG-AAGGGTTT
* *
5752 TCACGCTTCAAATATCGTTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGAAT
380 TCACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATT
* *
5817 AAGAAGCTCGTAAAAAAAAATCTTATATCCAATGTGGCTGAGATTTGTTTCAATTAATATAGT-T
445 AA-ATGCTCGTAAAAAAAAATCTTATATCCAATGTGGCTGAGATTTGTTTC-AGTAATATA-TAT
* * *
5881 ATTTCAAGGACTCTTTGCACCAAAAATTATGCAAAATTGAGCCAGGAATCCGGAACGCGTTTTTA
507 ATTACAAGGAGTCTTTGCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTA
* *
5946 GCCAAAAACCGTGAAGGTTAGTACACGATTTTGGCTAAAACTTTGCAAAAACTGACCCGAAA
572 GCCAAAAACCGTGATGGTTAGTACACGATTTTGGCT-AAA-TTTTCAAAAACTGACCCGAAA
Statistics
Matches: 1115, Mismatches: 135, Indels: 84
0.84 0.10 0.06
Matches are distributed among these distances:
644 20 0.02
645 21 0.02
646 104 0.09
647 79 0.07
648 126 0.11
649 48 0.04
650 3 0.00
651 4 0.00
652 36 0.03
653 473 0.42
654 175 0.16
655 26 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (645 bp):
TTTTATGCCACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAAGGGTTTTTCAC
GCTTCTAATATCGTTTTCCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCTGA
TACTCGTAAAAACAAATCTTATATCCAATGTGGCTGAGATTTGATTCAATGAATATAGATATTTA
AAGAGTCTTTGCCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAA
AACCGTGATGGTTAGTACACGATTTCGATTAAAAACTGACCCGAAATGTTTTTTTCTAATTTTTA
TGCCACAATACTCAGAAAAAATATATAATTCATGCTATAAAGATTGAAGGGTTTTCACGCTTCTA
ATATCGTTTTTCCATTTTTTCCGAATTAAAATCTAATTAAATCGAAACAAGATTAAATGCTCGTA
AAAAAAAATCTTATATCCAATGTGGCTGAGATTTGTTTCAGTAATATATATATTACAAGGAGTCT
TTGCACCAAAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTAGCCAAAAACCGTGA
TGGTTAGTACACGATTTTGGCTAAATTTTCAAAAACTGACCCGAAAACTTTTCAACTAAG
Found at i:5940 original size:976 final size:970
Alignment explanation
Indices: 4019--5985 Score: 3086
Period size: 976 Copynumber: 2.0 Consensus size: 970
4009 GGCCCCGAAA
*
4019 AGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTTCAATTTTTATGCCACAATACTCA
1 AGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCCAATTTTTATGCCACAATACTCA
* *
4084 GAAAAAACATATAATTCATCGCTATAAAGATTGAAGGGTTTTTCACGCTTCTAATACCGTTTTTC
66 GAAAAAACATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCATTTTTC
* *
4149 CATTTTTTCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCAAATTCTCGTAAAAAAAATTAT
131 CATTTTTCCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCAAATGCTCGTAAAAAAAATTAT
* *
4214 ATCCAATGTGGTTGAGATTTGTTTCAATACATATATATATTTCAAGAAGTCTTTGCACTAAAAAT
196 ATCCAATGTGGTTGAGATTTGTTTCAATACATATATATATTACAAGAAGTCTTTGCACCAAAAAT
*
4279 TATGCAAAATTGAGTCGGGAATCCGGAACGCGTTTTTCGCCAAAAACCGTGATGGTTAGTACACG
261 TATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTCGCCAAAAACCGTGATGGTTAGTACACG
* *
4344 ATTTTGACTAAAATTTTTCAAAAACCGACCCGAAAAGTGTTCATCAAGTTTTTGCCACAATAATC
326 ATTTTGACTAAAATTTTTCAAAAACCGACCCGAAAACTGTTCAACAAGTTTTTGCCACAATAATC
* *
4409 AGAAAAAATATATAATCCAAACTAAAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
391 AGAAAAAATATATAATCCAAACGAAAAAAAATGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
* * *
4474 CAATTTTTTCCGAATTTATTTCTAATTAAATTTAAATAAGATTTAGATGCTTGTAAAAACAAATC
456 AAATTTTTTCCGAATTTATTTCTAATTAAATCTAAATAAGATTTAGATACTTGTAAAAACAAATC
* *
4539 CTTATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTCCAAGGAGTCTTTGCGCTA
521 CTTATATCCAATGTGGCTGAGATTTGATTCAATGAATATAGATATTCCAAGGAGTCTTTGCGCTA
** *
4604 AAAATCATGCAAATTTGAACCGGGGCCCCGAAACGCGTTTTTAGCCCAAAACCGTGATGGTTAGT
586 AAAATCATGCAAAACTGAACCGGGGCCCCGAAACGCGTTTTTAGCCCAAAACCGTGATGGTTAAT
* * * *
4669 ACACGATTTCAGCTAAAAACTGGCCCGAATTTTTTTTTTCTAATTTTTATGCCACAATACTCAGA
651 ACACGATCTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTAATTTGTATGCCACAATACTCAGA
* * *
4734 AAAAATATATAATTCAACGCTATAAAGATTGAATGGGTTTTCACGCTTCTAATATTGTTTTCCCA
716 AAAAATATATAATTCAACGCTATAAAGATTGAAAGGGTTTTCACGCTTCAAATATCGTTTTCCCA
* ** * *
4799 TTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGATTCTGATGCTCGTAAAAACAAATTCT
781 TTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGAATAAGAAGCTCGTAAAAACAAAATCT
* * * *
4864 TATATCCAATGTGGCTGAGATTTGGTTCGATGAATATAGATATTTGAAAGAGTCTTTGCTCCAAA
846 TATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGACTCTTTGCACCAAA
* * ** * *
4929 AATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTTGCCCAAAAACCGTGATGGTT
911 AATCATGCAAAACTGAGCCAGGAACCCGAAACGCGTTTTTAG-CCAAAAACCGTGAAGGTT
*
4990 AGTACACGATTTCGGATAAAAACTGACCCGAAATGTTTTTTTCCTAATTTTTATGCCACAATACT
1 AGTACACGATTTCGGCTAAAAACTGACCCGAAAT-TTTTTTTCC-AATTTTTATGCCACAATACT
* *
5055 CAGAAAAAATATATAGTTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCATTTT
64 CAGAAAAAACATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCATTTT
*
5120 TCCATTTTTCCCGAATTAAAATCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAAAAAAT
129 TCCATTTTTCCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCAAATGCTCGT-AAAAAAAA-
*
5185 TTTATATCCAATGTGGTTGAGATTTGTTTCAGTACATATATATATTACAAGAAGTCTTTGCACCA
192 -TTATATCCAATGTGGTTGAGATTTGTTTCAATACATATATATATTACAAGAAGTCTTTGCACCA
* *
5250 AAAATTATGCAAAATTGAGCCGGGAATCCGGAATGCGTTTTTCG-CAAAAACCGTGATTGTTTA-
256 AAAATTATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTCGCCAAAAACCGTGA-TGGTTAG
* * *
5313 TACACGATTTTGGCTTAAATTTTTCAAAAACCGACCCGAAAACTTTTCAACAAGTTTTCT-CCAC
320 TACACGATTTTGACTAAAATTTTTCAAAAACCGACCCGAAAACTGTTCAACAAGTTTT-TGCCAC
* * *
5377 AATAATCAGAAAAAATATATAATTCAAAGGAAAAAAAATGACGGGTTTTTCACGACTTCTAATAT
384 AATAATCAGAAAAAATATATAATCCAAACGAAAAAAAATGAAGGGTTTTTCACG-CTTCTAATAT
*
5442 CGTTTTTCAAATTTTTTTCCGAATTTATTTCTAATTAAATCTAAATACGATTTAGATACTTGT-A
448 CGTTTTTCAAA-TTTTTTCCGAATTTATTTCTAATTAAATCTAAATAAGATTTAGATACTTGTAA
* *
5506 AAACAAATCCTTATATTCAATGTGGCTGAGATTTGATTCAATGAATATAGATATTTCAAGGAGTC
512 AAACAAATCCTTATATCCAATGTGGCTGAGATTTGATTCAATGAATATAGATATTCCAAGGAGTC
** *
5571 TTTGCGC-AAAAGATCATGCAAAACTGAGTCGGGGCCCCGAAACGCGTTTTTAGCCCAAACCCGT
577 TTTGCGCTAAAA-ATCATGCAAAACTGAACCGGGGCCCCGAAACGCGTTTTTAGCCCAAAACCGT
* *
5635 GATGTTTTTAATACACGATCTC-GACTAAAAACTGACCCGAAATTTTTTTTTCTTATTTGTATGC
641 GATG--GTTAATACACGATCTCAG-CTAAAAACTGACCCGAAATTTTTTTTTCTAATTTGTATGC
*
5699 CACAATACTCAGAAAAAATATATAATTCAATGCTATAAAGATTGAAAGGGTTTTCACGCTTCAAA
703 CACAATACTCAGAAAAAATATATAATTCAACGCTATAAAGATTGAAAGGGTTTTCACGCTTCAAA
*
5764 TATCGTTTTTCCATTTTTTCC-GAATTAAAATCTAATTAAATCGAAACAAGAATAAGAAGCTCGT
768 TATCGTTTTCCCATTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGAATAAGAAGCTCGT
* * * *
5828 AAAAA-AAAATCTTATATCCAATGTGGCTGAGATTTGTTTCAATTAATATAGTTATTTCAAGGAC
833 AAAAACAAAATCTTATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGAC
* * * *
5892 TCTTTGCACCAAAAATTATGCAAAATTGAGCCAGGAATCCGGAACGCGTTTTTAGCCAAAAACCG
898 TCTTTGCACCAAAAATCATGCAAAACTGAGCCAGGAACCCGAAACGCGTTTTTAGCCAAAAACCG
5957 TGAAGGTT
963 TGAAGGTT
*
5965 AGTACACGATTTTGGCTAAAA
1 AGTACACGATTTCGGCTAAAA
5986 CTTTGCAAAA
Statistics
Matches: 908, Mismatches: 75, Indels: 22
0.90 0.07 0.02
Matches are distributed among these distances:
971 33 0.04
972 8 0.01
973 133 0.15
974 8 0.01
975 158 0.17
976 345 0.38
977 93 0.10
978 130 0.14
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (970 bp):
AGTACACGATTTCGGCTAAAAACTGACCCGAAATTTTTTTTCCAATTTTTATGCCACAATACTCA
GAAAAAACATATAATTCATCGCTATAAAGATTGAAGGGATTTTCACGCTTCTAATACCATTTTTC
CATTTTTCCCGAATTAAAATCTAATTAAATCGAAAAAAGATTCAAATGCTCGTAAAAAAAATTAT
ATCCAATGTGGTTGAGATTTGTTTCAATACATATATATATTACAAGAAGTCTTTGCACCAAAAAT
TATGCAAAATTGAGCCGGGAATCCGGAACGCGTTTTTCGCCAAAAACCGTGATGGTTAGTACACG
ATTTTGACTAAAATTTTTCAAAAACCGACCCGAAAACTGTTCAACAAGTTTTTGCCACAATAATC
AGAAAAAATATATAATCCAAACGAAAAAAAATGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC
AAATTTTTTCCGAATTTATTTCTAATTAAATCTAAATAAGATTTAGATACTTGTAAAAACAAATC
CTTATATCCAATGTGGCTGAGATTTGATTCAATGAATATAGATATTCCAAGGAGTCTTTGCGCTA
AAAATCATGCAAAACTGAACCGGGGCCCCGAAACGCGTTTTTAGCCCAAAACCGTGATGGTTAAT
ACACGATCTCAGCTAAAAACTGACCCGAAATTTTTTTTTCTAATTTGTATGCCACAATACTCAGA
AAAAATATATAATTCAACGCTATAAAGATTGAAAGGGTTTTCACGCTTCAAATATCGTTTTCCCA
TTTTTTCCAGAATTAAAATCTAATTAAATCGAAACAAGAATAAGAAGCTCGTAAAAACAAAATCT
TATATCCAATGTGGCTGAGATTTGGTTCAATGAATATAGATATTTCAAAGACTCTTTGCACCAAA
AATCATGCAAAACTGAGCCAGGAACCCGAAACGCGTTTTTAGCCAAAAACCGTGAAGGTT
Done.