Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011042.1 Corchorus capsularis cultivar CVL-1 contig11063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111769

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
958--4707
658
5.8
652
86
4
4916
35
15
14
34
1.89
973--4707
323
11.5
322
80
7
3998
34
15
14
34
1.89
6201--6245
7
6.4
7
86
0
63
26
42
15
15
1.87
6201--6245
21
2.1
21
91
0
72
26
42
15
15
1.87
15941--15971
2
15.5
2
100
0
62
48
0
51
0
1.00
16601--16646
3
15.3
3
100
0
92
32
0
0
67
0.91
17389--17464
22
3.4
22
79
1
80
39
13
14
32
1.85
17389--17476
44
2.0
44
84
4
115
39
11
15
32
1.84
17524--18152
22
28.4
22
65
9
145
37
9
14
38
1.79
17448--17740
132
2.2
132
92
1
480
37
10
13
37
1.80
17766--17841
21
3.6
21
76
16
84
43
13
9
34
1.75
18213--18269
22
2.6
22
83
5
71
43
12
7
36
1.69
18258--18313
22
2.5
22
80
11
62
39
7
14
39
1.73
33463--33488
13
2.0
13
100
0
52
46
0
0
53
1.00
37580--37610
16
1.9
16
93
0
53
3
16
22
58
1.52
41794--41874
29
2.7
30
82
3
101
39
13
23
23
1.90
43260--43943
342
2.0
342
98
0
1323
42
15
16
25
1.87
59289--59314
11
2.4
11
100
0
52
92
0
7
0
0.39
71960--72000
3
13.0
3
85
10
55
63
0
2
34
1.08
72665--72690
2
13.0
2
100
0
52
50
0
0
50
1.00
88346--88385
20
2.0
21
85
5
55
50
5
5
40
1.46

Tables:   1

The End!