Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011044.1 Corchorus capsularis cultivar CVL-1 contig11065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160104

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
663--726
26
2.4
27
82
12
87
59
7
25
7
1.52
39073--39110
20
1.9
19
89
5
58
73
10
10
5
1.23
40601--40671
31
2.3
31
100
0
142
39
15
9
35
1.81
69152--69208
29
2.0
29
96
0
105
49
21
15
14
1.80
69395--69493
49
2.0
49
100
0
198
56
16
8
19
1.64
73937--73980
22
2.0
22
100
0
88
45
4
22
27
1.72
87295--87333
11
3.1
14
82
17
50
53
0
0
46
1.00
97197--97227
15
2.1
15
100
0
62
45
25
19
9
1.81
104141--104168
13
2.2
13
100
0
56
85
14
0
0
0.59
104782--104882
29
3.4
30
79
4
105
40
19
8
30
1.82
104885--105014
42
3.1
42
91
2
199
30
8
33
28
1.87
125307--125532
36
6.3
36
77
10
201
14
27
17
40
1.89
142296--142326
5
6.2
5
100
0
62
58
0
22
19
1.40
142455--142497
13
3.4
12
90
6
59
0
6
4
88
0.63
143244--143610
183
2.0
183
94
0
644
26
30
10
32
1.90
157706--157824
51
2.3
51
95
1
211
37
14
17
30
1.90
157945--158222
148
1.9
148
85
3
389
26
16
19
36
1.94
158074--158844
332
2.3
333
87
3
1099
31
14
16
36
1.90
158408--160104
473
3.6
472
85
5
2221
31
16
16
35
1.91

Tables:   1

The End!