Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011053.1 Corchorus capsularis cultivar CVL-1 contig11074, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99971

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--144
15
8.8
16
74
10
83
48
0
0
50
1.05
54--177
24
5.2
24
65
10
74
50
0
0
48
1.06
5--144
2
76.5
2
68
17
54
48
0
0
50
1.05
364--416
23
2.4
22
78
12
63
43
7
15
33
1.74
13543--13642
31
3.2
31
82
0
101
18
18
27
37
1.93
13647--13705
31
1.9
31
89
0
91
18
22
23
35
1.96
16448--16525
32
2.5
32
85
6
97
21
11
32
34
1.89
16448--16543
32
3.0
32
78
15
85
21
12
30
35
1.91
16679--16736
16
3.7
16
73
13
57
6
12
32
48
1.67
18834--18865
12
2.7
12
90
0
55
90
0
9
0
0.45
31613--31665
3
17.7
3
84
0
70
33
0
33
32
1.58
57700--57730
3
10.3
3
92
0
53
61
0
3
35
1.12
60721--60856
71
1.9
71
95
3
247
20
31
9
38
1.85
69733--69997
75
3.5
74
91
2
431
42
6
17
34
1.74
71580--71611
10
3.0
11
90
9
57
25
9
0
65
1.22
77558--77584
6
4.5
6
100
0
54
18
14
66
0
1.25
77581--77605
6
4.2
6
100
0
50
16
16
68
0
1.22
77625--77686
27
2.3
27
97
2
117
25
20
27
25
1.99
79861--79901
21
2.0
21
100
0
82
29
9
24
36
1.87
81063--81102
6
6.7
6
97
0
53
17
7
75
0
1.03
81063--81102
12
3.3
12
92
0
62
17
7
75
0
1.03
81881--82143
115
2.3
118
91
2
433
31
11
18
38
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90030--90072
21
2.0
21
82
8
52
62
25
2
9
1.37
93813--93846
8
4.2
8
88
0
50
0
23
2
73
0.97

Tables:   1

The End!