Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011054.1 Corchorus capsularis cultivar CVL-1 contig11075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56120

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5948--5974
6
4.5
6
100
0
54
70
14
14
0
1.17
13726--13755
2
15.0
2
100
0
60
50
0
0
50
1.00
22160--22192
17
1.9
17
100
0
66
42
12
6
39
1.67
22457--22617
83
1.9
84
93
3
281
32
21
11
33
1.90
22729--22772
21
2.0
21
82
4
52
52
4
0
43
1.22
23195--23468
138
2.0
138
100
0
548
33
10
13
42
1.79
24114--24223
31
3.5
31
79
0
121
18
22
26
32
1.97
26467--26535
29
2.4
29
85
0
84
42
26
11
20
1.86
31841--38017
329
18.9
329
75
9
5091
34
16
14
34
1.89
31841--38018
657
9.5
651
80
6
6604
34
16
14
34
1.89
38645--40358
331
5.3
320
77
9
1552
35
17
13
33
1.89
39231--40358
325
3.5
320
78
9
1148
35
17
12
34
1.88
38636--40358
655
2.6
644
83
6
2278
34
17
13
34
1.89
40494--41006
285
1.8
283
83
5
685
35
15
13
35
1.87
40721--41911
648
1.8
649
84
6
1613
34
17
13
34
1.89
40777--41987
319
3.7
326
76
9
1186
34
17
14
33
1.90
40759--42069
648
2.0
650
81
6
1543
35
16
14
33
1.89
44804--44890
46
1.9
45
85
2
120
35
11
20
32
1.89
47351--47412
29
2.1
30
82
8
74
22
24
11
41
1.86
47748--47819
28
2.5
28
79
6
81
43
11
20
25
1.85
50675--55878
320
16.0
321
78
8
4795
36
15
14
33
1.89
50670--55961
653
8.1
649
82
7
5177
35
15
14
33
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50675--55847
984
5.3
967
80
8
4920
36
15
14
33
1.89
55958--56006
18
2.7
18
90
3
80
40
22
24
12
1.88

Tables:   1

The End!