Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011056.1 Corchorus capsularis cultivar CVL-1 contig11077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64925

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3252--3342
29
3.2
29
75
4
78
37
13
27
21
1.91
6754--7334
107
5.5
107
92
3
921
40
8
9
40
1.69
6754--7334
212
2.7
213
92
3
924
40
8
9
40
1.69
8319--8380
19
3.3
19
65
13
56
9
25
14
50
1.73
8311--8387
37
2.1
37
100
0
154
7
27
16
48
1.74
37006--37059
26
2.1
26
100
0
108
33
3
14
48
1.62
49456--49497
2
21.0
2
90
0
66
50
0
45
4
1.23
52545--52598
24
2.3
23
71
6
54
59
7
3
29
1.42
61411--61444
16
2.2
16
89
5
52
50
38
5
5
1.51
61698--61768
30
2.4
30
95
2
126
22
23
11
42
1.86
61996--62083
29
3.0
29
80
9
97
39
14
28
17
1.89
62290--62314
13
1.9
13
100
0
50
8
60
0
32
1.26
62344--62436
46
2.0
46
97
0
177
17
40
23
18
1.90
63627--63657
14
2.2
14
100
0
62
48
6
25
19
1.72

Tables:   1

The End!