Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011057.1 Corchorus capsularis cultivar CVL-1 contig11078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100627

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
48
0
0
51
1.00
3980--4013
16
2.1
16
94
0
59
26
20
5
47
1.73
4080--4941
288
3.0
287
92
1
1444
32
14
19
32
1.92
6766--6794
6
4.8
6
100
0
58
31
0
51
17
1.45
7252--7307
30
1.9
29
89
7
87
26
12
21
39
1.89
9333--9390
30
1.9
31
85
3
82
46
1
24
27
1.62
9520--9559
8
5.0
8
93
0
71
25
27
10
37
1.88
10763--10802
19
2.1
20
90
9
66
47
5
37
10
1.59
13028--13060
2
16.5
2
100
0
66
51
0
0
48
1.00
18993--19054
24
2.8
21
73
17
63
9
30
29
30
1.89
19005--19113
24
4.5
24
92
0
164
11
25
32
30
1.92
19106--19215
51
2.2
51
98
0
211
17
22
37
22
1.94
20326--20485
80
2.0
80
100
0
320
31
21
13
33
1.92
21311--21542
122
2.0
115
85
13
316
40
10
10
37
1.74
29342--29398
30
2.0
29
89
6
89
31
14
15
38
1.87
33587--33612
6
4.3
6
100
0
52
50
15
34
0
1.45
33887--33924
10
3.8
10
86
6
51
2
15
0
81
0.80
37027--37054
6
4.7
6
100
0
56
64
0
35
0
0.94
52644--52756
29
3.8
29
75
13
122
38
1
21
38
1.64
52650--52776
60
2.1
60
100
0
254
38
3
21
37
1.69
52682--52781
31
3.3
31
72
17
109
41
4
19
36
1.70
55791--55950
31
5.5
31
76
13
140
17
23
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59518--59546
15
1.9
15
100
0
58
44
20
0
34
1.52
69897--69925
5
5.8
5
100
0
58
0
17
0
82
0.66
71078--71138
29
2.1
29
93
0
104
22
22
13
40
1.89
71354--71424
29
2.4
30
83
6
92
39
12
30
16
1.86
88270--88299
14
2.1
14
100
0
60
33
13
0
53
1.40
90201--90230
11
2.6
12
89
10
53
40
0
0
60
0.97
92320--92364
1
45.0
1
100
0
90
0
0
0
100
0.00
95151--95205
28
2.1
27
90
10
87
43
3
18
34
1.67
97706--97736
15
2.1
15
100
0
62
25
0
12
61
1.32
99150--100607
638
2.3
631
79
8
1533
34
13
16
35
1.88

Tables:   1

The End!