Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001106.1 Corchorus capsularis cultivar CVL-1 contig01106, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12320
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:5729 original size:21 final size:21

Alignment explanation


    Indices: 5703--5748  Score: 92
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       5693 CCTTGTTGTC

                                 
       5703 GCTTGTTCTTCCAAACAAAAA
          1 GCTTGTTCTTCCAAACAAAAA

                                 
       5724 GCTTGTTCTTCCAAACAAAAA
          1 GCTTGTTCTTCCAAACAAAAA

                
       5745 GCTT
          1 GCTT

       5749 TAATCAATGA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.35, C:0.24, G:0.11, T:0.30


Consensus pattern (21 bp):   
GCTTGTTCTTCCAAACAAAAA
Done.