Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011068.1 Corchorus capsularis cultivar CVL-1 contig11089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8016
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.35


Found at i:6148 original size:4 final size:4

Alignment explanation


    Indices: 6141--6178  Score: 76
    Period size: 4  Copynumber: 9.5  Consensus size: 4

       6131 TAGATTTGTA

                                                           
       6141 TATC TATC TATC TATC TATC TATC TATC TATC TATC TA
          1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TA

       6179 CCTGTCCGTC


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   34  1.00

ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50


Consensus pattern (4 bp):   
TATC

Found at i:7489 original size:2 final size:2

Alignment explanation


    Indices: 7482--7512  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       7472 TTCCTTTTAT

                                                          
       7482 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       7513 TCATGATAGC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.