Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011073.1 Corchorus capsularis cultivar CVL-1 contig11094, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76385

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32541--32566
4
6.5
4
100
0
52
23
0
0
76
0.78
32724--32758
2
17.5
2
87
0
52
48
2
2
45
1.32
41106--41211
53
2.0
52
96
1
194
43
14
10
32
1.79
44152--44298
78
1.9
80
91
2
244
35
19
6
38
1.78
45258--45615
191
1.9
192
92
0
610
44
19
19
16
1.87
47213--47241
9
3.3
9
95
4
51
34
10
0
55
1.34
48959--48994
2
18.0
2
88
11
56
47
2
0
50
1.15
50397--50425
14
2.1
14
100
0
58
27
6
6
58
1.50
55384--55411
2
14.0
2
100
0
56
50
0
0
50
1.00
55669--55694
2
13.0
2
100
0
52
50
0
0
50
1.00
62402--62428
6
4.5
6
100
0
54
85
14
0
0
0.61
71334--71404
36
2.0
36
91
0
115
52
25
9
12
1.70

Tables:   1

The End!