genome.fa.s11077.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011077.1 Corchorus capsularis cultivar CVL-1 contig11098, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99572

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--176	78	2.2	79	97	1	326	36	14	0	48	1.44
845--906	31	2.0	32	90	3	99	29	16	3	51	1.59
1437--1474	19	2.0	20	85	15	53	28	5	2	63	1.30
4435--4537	53	1.9	53	88	0	152	36	27	19	16	1.93
4487--4584	31	3.2	31	83	1	117	33	26	21	18	1.96
4531--4594	30	2.1	30	85	0	83	37	20	23	18	1.94
8183--8492	22	14.1	22	67	16	99	36	14	8	39	1.78
8235--8319	23	3.7	23	78	7	84	38	12	5	42	1.68
8215--8319	45	2.3	45	78	12	108	39	13	7	40	1.73
8480--8530	19	2.6	20	90	6	86	25	17	11	45	1.83
8611--8845	22	10.7	22	68	18	100	34	12	9	42	1.75
8959--9016	24	2.6	23	76	10	57	36	17	8	37	1.80
9052--9195	22	6.5	22	73	10	96	38	19	9	33	1.83
9587--9623	19	1.9	19	89	10	58	64	0	5	29	1.15
9640--9697	26	2.2	26	93	0	98	37	17	8	36	1.80
9947--10013	31	2.1	32	83	10	93	46	4	16	32	1.67
9954--10019	31	2.1	31	88	5	98	46	4	19	28	1.69
12760--12850	46	2.0	46	89	4	141	21	12	18	47	1.81
28852--28934	41	2.0	41	100	0	166	40	19	18	21	1.91
33658--33743	44	2.0	44	92	0	145	45	15	16	23	1.85
38114--38140	7	3.9	7	100	0	54	29	11	29	29	1.91
42301--42338	17	2.2	17	90	0	58	55	10	0	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43267--43304	1	38.0	1	100	0	76	0	0	0	100	0.00
43801--43841	3	13.7	3	89	0	64	60	0	2	36	1.10
59227--59259	1	33.0	1	100	0	66	0	0	0	100	0.00
65711--65786	23	3.3	23	63	23	59	43	10	6	39	1.65
65694--65787	47	2.0	47	100	0	188	44	10	6	38	1.65
68353--68389	2	19.0	2	94	5	67	48	0	0	51	1.00
72493--73746	334	3.8	329	75	8	942	36	15	13	34	1.86
73540--74075	290	1.8	290	85	3	749	37	14	13	34	1.85
73833--74661	332	2.5	331	82	4	938	36	15	12	35	1.86
74712--75281	22	26.6	23	72	12	271	38	14	14	32	1.86
75020--75095	37	2.0	39	89	5	120	42	14	11	31	1.82
76618--76647	15	1.9	16	93	6	53	53	3	0	43	1.17
76706--77070	178	2.0	182	90	4	576	46	8	8	36	1.64
85851--85898	19	2.6	18	77	12	53	41	2	0	56	1.11
86890--86961	37	1.9	37	97	0	135	40	11	9	38	1.74
88961--89155	31	6.5	30	75	10	166	29	19	14	36	1.92
88989--89156	60	2.8	60	84	4	234	30	19	14	35	1.92
89023--89124	29	3.5	29	74	11	109	33	20	12	33	1.90
88989--89128	59	2.4	59	91	1	217	31	18	13	36	1.90
91550--91620	29	2.4	29	83	0	88	39	26	11	22	1.88
92672--92888	109	2.0	107	89	5	330	46	7	11	35	1.67
93627--93685	31	1.9	31	89	0	91	45	5	16	32	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93643--93781	69	2.0	70	92	1	235	41	11	10	36	1.75
95287--95369	22	3.7	22	76	7	60	37	14	13	34	1.85
96431--96464	2	17.0	2	93	0	59	52	0	0	47	1.00
97088--97146	31	2.0	30	83	9	77	23	1	11	62	1.38

Tables:   1

The End!