Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011078.1 Corchorus capsularis cultivar CVL-1 contig11099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109300

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4594--4651
28
2.1
28
100
0
116
51
10
3
34
1.53
5513--11634
650
9.4
635
77
10
3885
33
14
16
35
1.89
11540--11755
107
2.0
108
98
0
416
36
8
18
36
1.82
15518--15548
15
2.1
15
100
0
62
25
0
32
41
1.56
16212--16257
23
2.0
23
95
0
83
28
8
15
47
1.74
18499--18539
15
2.8
15
92
3
66
58
0
0
41
0.98
20149--20179
12
2.6
12
94
0
53
19
22
29
29
1.98
24203--24240
19
2.0
20
89
5
60
57
10
23
7
1.58
37860--37890
13
2.4
13
94
0
53
3
0
9
87
0.66
38586--38739
31
5.0
31
81
4
159
36
24
21
18
1.95
61493--61877
192
2.0
192
100
0
770
32
15
17
35
1.91
65436--65478
17
2.6
16
82
10
50
23
20
20
34
1.96
83087--83128
16
2.6
16
85
7
50
59
2
30
7
1.37
83579--83665
29
3.2
27
79
9
88
57
16
12
13
1.65
83579--83671
26
3.5
25
78
17
98
55
16
13
13
1.69
84236--84318
42
2.0
43
83
7
107
34
21
18
25
1.96
84531--84583
15
3.5
15
77
10
63
3
43
1
50
1.30
97470--97520
27
1.9
27
92
4
86
50
1
11
35
1.50
109258--109295
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!