genome.fa.s11079.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011079.1 Corchorus capsularis cultivar CVL-1 contig11100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159855

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10829--10855	2	13.5	2	100	0	54	48	0	51	0	1.00
14059--14139	31	2.6	32	82	4	101	33	28	23	14	1.94
17807--17978	31	5.5	31	85	0	182	32	26	22	18	1.97
19922--19950	1	29.0	1	100	0	58	100	0	0	0	0.00
22915--22950	7	5.3	7	86	6	56	38	0	0	61	0.96
22926--22971	24	1.9	24	86	8	67	39	0	2	58	1.10
22924--22977	24	2.2	24	77	6	65	38	0	1	59	1.08
35240--35382	76	1.8	76	85	7	198	46	3	11	37	1.58
35308--35686	192	2.0	191	94	1	661	50	6	9	33	1.61
35316--35738	192	2.2	192	85	5	498	50	6	9	33	1.60
35716--35919	84	2.4	85	90	2	311	50	1	7	40	1.39
36968--37031	5	13.0	5	82	9	78	42	1	15	40	1.57
40915--40995	41	2.0	41	95	0	144	32	9	22	35	1.87
54794--54819	2	13.0	2	100	0	52	50	0	0	50	1.00
54974--55014	20	2.0	20	85	0	55	46	12	19	21	1.82
58418--58480	29	2.2	29	85	0	81	23	17	11	47	1.79
64262--64299	18	2.1	19	85	5	51	73	0	26	0	0.83
75711--75753	21	2.0	22	81	4	52	20	37	9	32	1.85
86318--86372	24	2.3	24	90	0	92	18	30	5	45	1.72
87680--87780	49	2.1	49	92	0	166	31	24	13	29	1.94
87736--87818	41	2.0	41	86	9	116	38	19	18	24	1.93
96820--96854	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99386--99886	250	2.0	249	99	0	993	39	18	6	34	1.77
106000--106026	13	2.1	13	100	0	54	62	0	22	14	1.31
133035--133217	91	2.0	91	92	2	305	26	11	32	28	1.91
137671--142393	321	14.6	322	77	7	4027	32	14	17	35	1.90
137671--142393	654	7.3	642	84	6	4932	32	14	17	35	1.90
144819--144860	20	2.0	21	95	4	77	23	19	23	33	1.97

Tables:   1

The End!