Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001108.1 Corchorus capsularis cultivar CVL-1 contig01108, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3463
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32


Found at i:3043 original size:50 final size:50

Alignment explanation


    Indices: 2981--3076  Score: 183
    Period size: 50  Copynumber: 1.9  Consensus size: 50

       2971 TGTAAAGGAC

                                                              
       2981 TAGGAAAAGTTGAGTAACAAATTTTTAATGCAATAAATTGATTGATGGAG
          1 TAGGAAAAGTTGAGTAACAAATTTTTAATGCAATAAATTGATTGATGGAG

                            *                             
       3031 TAGGAAAAGTTGAGTAGCAAATTTTTAATGCAATAAATTGATTGAT
          1 TAGGAAAAGTTGAGTAACAAATTTTTAATGCAATAAATTGATTGAT

       3077 ATGAGTTATG


Statistics
Matches: 45,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  50   45  1.00

ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33


Consensus pattern (50 bp):   
TAGGAAAAGTTGAGTAACAAATTTTTAATGCAATAAATTGATTGATGGAG
Done.