Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011080.1 Corchorus capsularis cultivar CVL-1 contig11101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51038

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
568--635
36
2.0
35
88
11
106
36
8
5
48
1.59
5974--6053
2
40.0
2
78
14
58
43
5
1
50
1.32
5974--6087
60
1.9
57
80
16
126
43
6
2
47
1.42
6124--6168
18
2.4
18
81
7
54
55
8
0
35
1.31
10173--10200
2
14.0
2
100
0
56
50
0
0
50
1.00
15023--15080
27
2.1
27
93
0
98
29
22
3
44
1.69
18780--18832
24
2.2
24
83
6
63
3
32
5
58
1.39
21577--21656
42
2.0
40
85
7
108
46
18
8
26
1.78
30148--30186
20
1.9
21
89
5
62
48
17
0
33
1.48
40457--40515
25
2.5
24
86
5
75
37
18
0
44
1.50
40525--40628
26
4.0
26
77
14
108
53
9
1
34
1.45
40525--40642
52
2.4
51
79
13
122
54
10
1
33
1.44
40925--40971
22
2.1
22
84
0
58
48
8
29
12
1.71
46167--46462
88
3.5
87
85
10
443
30
17
31
19
1.96
46265--46416
76
2.0
76
93
0
259
32
17
30
20
1.95

Tables:   1

The End!