Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011085.1 Corchorus capsularis cultivar CVL-1 contig11106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20874
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Found at i:3005 original size:12 final size:12
Alignment explanation
Indices: 2988--3018 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
2978 TAAGAAAATC
2988 AGAATCATAAAG
1 AGAATCATAAAG
3000 AGAATCATAAAG
1 AGAATCATAAAG
*
3012 AAAATCA
1 AGAATCA
3019 GAGTTTGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.61, C:0.10, G:0.13, T:0.16
Consensus pattern (12 bp):
AGAATCATAAAG
Found at i:10422 original size:21 final size:21
Alignment explanation
Indices: 10396--10437 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10386 TGGGCCTTCA
* *
10396 TCCTCACCATTTTCACCATGT
1 TCCTCAACATCTTCACCATGT
*
10417 TCCTCAACATCTTCATCATGT
1 TCCTCAACATCTTCACCATGT
10438 AAACCTTCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.36, G:0.05, T:0.38
Consensus pattern (21 bp):
TCCTCAACATCTTCACCATGT
Found at i:10562 original size:21 final size:22
Alignment explanation
Indices: 10538--10588 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
10528 CCAACATCCT
10538 CAACAGA-ATCACCCAAGTTGA
1 CAACAGAGATCACCCAAGTTGA
*
10559 CAACAGGAGGATCACCCAAGTTTA
1 CAACA-GA-GATCACCCAAGTTGA
10583 CAACAG
1 CAACAG
10589 GAGGATCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 5 0.19
22 2 0.08
23 1 0.04
24 18 0.69
ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14
Consensus pattern (22 bp):
CAACAGAGATCACCCAAGTTGA
Found at i:10605 original size:24 final size:24
Alignment explanation
Indices: 10545--10605 Score: 97
Period size: 24 Copynumber: 2.5 Consensus size: 24
10535 CCTCAACAGA
*
10545 ATCACCCAAGTTGACAACAGGAGG
1 ATCACCCAAGTTTACAACAGGAGG
10569 ATCACCCAAGTTTACAACAGGAGG
1 ATCACCCAAGTTTACAACAGGAGG
10593 ATCGA-CCAAGTTT
1 ATC-ACCCAAGTTT
10606 TCCCCATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 34 0.97
25 1 0.03
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (24 bp):
ATCACCCAAGTTTACAACAGGAGG
Found at i:11293 original size:123 final size:123
Alignment explanation
Indices: 11155--11394 Score: 374
Period size: 123 Copynumber: 2.0 Consensus size: 123
11145 AGAATCTTAG
* * *
11155 AAATTTTAAAGGAAGAACGAACAAAATATCGAAATTTAAAGCCTTCAAAACCCTAGCATTTTACC
1 AAATTTTAAAAGAAGAACGAACAAAATATCGAAATTTAAACCCTTCAAAACCCTAGAATTTTACC
* *
11220 CATTTTCATTTCAAAC-ATGCTAATGTTGCAATTAAACACAAAACCCCAACAACCGTAT
66 CATTTTCATTTCAAACAAAG-AAATGTTGCAATTAAACACAAAACCCCAACAACCGTAT
* * ** *
11278 AAATTTTAAAAGAAGAATGAACATAATATCGAAATTTTTACCCTTCATAACCCTAGAATTTTACC
1 AAATTTTAAAAGAAGAACGAACAAAATATCGAAATTTAAACCCTTCAAAACCCTAGAATTTTACC
11343 CATTTTCATTTCAAACAAAGAAATGTTGCAATTAAACACAAAACCCCAACAA
66 CATTTTCATTTCAAACAAAGAAATGTTGCAATTAAACACAAAACCCCAACAA
11395 ATTACTTAAT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
123 104 0.98
124 2 0.02
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (123 bp):
AAATTTTAAAAGAAGAACGAACAAAATATCGAAATTTAAACCCTTCAAAACCCTAGAATTTTACC
CATTTTCATTTCAAACAAAGAAATGTTGCAATTAAACACAAAACCCCAACAACCGTAT
Found at i:11489 original size:21 final size:21
Alignment explanation
Indices: 11463--11504 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
11453 GAACCCTAGC
11463 TCGCCCAGAAAAATCCCAAAT
1 TCGCCCAGAAAAATCCCAAAT
11484 TCGCCCAGAAAAATCCCAAAT
1 TCGCCCAGAAAAATCCCAAAT
11505 CTATCCGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.33, G:0.10, T:0.14
Consensus pattern (21 bp):
TCGCCCAGAAAAATCCCAAAT
Found at i:14292 original size:31 final size:30
Alignment explanation
Indices: 14220--14293 Score: 76
Period size: 31 Copynumber: 2.4 Consensus size: 30
14210 GCGTCCGTTG
*
14220 TGGCATGCCACGTGTCCTTTTTCGTACACG
1 TGGCATGCCACGTGTCCTTTTTCGTACACA
* * * * **
14250 TAGCGTACCACGTGTCATTTTTTTTTACACA
1 TGGCATGCCACGTGTC-CTTTTTCGTACACA
14281 TGGCATGCCACGT
1 TGGCATGCCACGT
14294 TGGACACCGT
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
30 13 0.39
31 20 0.61
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (30 bp):
TGGCATGCCACGTGTCCTTTTTCGTACACA
Found at i:16185 original size:379 final size:371
Alignment explanation
Indices: 15460--16203 Score: 1054
Period size: 379 Copynumber: 2.0 Consensus size: 371
15450 CTTAGGGGCT
* *
15460 GTTTGGGATCGTTTTCGTTTTTCTGTTTTTTGTTTTTGTTTCGTTTTCGTTTTGTTTTTGTTGCG
1 GTTTGGCATCGTTTTCGTTTTTCTGTTTTTTATTTTTGTTTCGTTTTCGTTTTGTTTTTGTTGCG
*
15525 CTGTCAATTTTTTAGAAAACAAAAATCATTGTTTGGATTATACAATTTTGTTGTATGATTTTTAA
66 CTGTCAATTTTTTAGAAAACAAAAATCATTGTTTGGATTATACAATTTGGTTGTATGATTTTTAA
***** * *
15590 ATAAAAAAGTTCTTTAAAAAAAGTAAAAATGTATGTGAGTTACTATTCATGACTGTGCTTCTGTG
131 ATAAAAAAGTAAAAGAAAAAAAGTAAAAATGTATGTGAATTACTATTCATCACTGTGCTTCTGTG
* * * * *
15655 TTTTGGAAAAACATGAAAGCACAAATTTTTTGCTTCCATTTTTTTCCAAAACACTGATTTTGTTT
196 TTTTGGAAAAACATGAAAACACAAAATTCTTGCTTCCACTTTTTTCCAAAACACTGATTCTGTTT
15720 CCAAAATTTTAGAAAACAGAAACAGCCTGCCAAACATGTTTTCACTGTTTTGTTTCCAAAAACAG
261 CCAAAATTTTAGAAAACAGAAACAGCCTGCCAAACATGTTTTCACTGTTTTGTTTCCAAAAACAG
* *
15785 AAAATGGGCAACAGAAAACAGGAAACAGAAACAATGCCAAGGGGTC
326 AAAATGGACAACAGAAAACAGGAAACAAAAACAATGCCAAGGGGTC
15831 GTTTGGCATCGTTTTCGTTTTTCTGTTTTTTTTATTTTTGTTTCGTTTTCGTTTTGTTTTTGTTG
1 GTTTGGCATCGTTTTCGTTTTTCTG--TTTTTTATTTTTGTTTCGTTTTCGTTTTGTTTTTGTTG
15896 CGCTGTCAA-TTTTTA-AAAACAAAAA-CA-TGTTTGGA-TATACAATTTGGTTGTATG-TTTTT
64 CGCTGTCAATTTTTTAGAAAACAAAAATCATTGTTTGGATTATACAATTTGGTTGTATGATTTTT
* *
15955 AAATAAAAAAGTAAAAGAAAAAATGGTTAAAAA-GCT-TGTGAATTACTGTTCATCATTCTGCTT
129 AAATAAAAAAGTAAAAGAAAAAA-AG-TAAAAATG-TATGTGAATTACTATTCATCA--CTG--T
* *
16018 CCGTGTTTTGGAAGTGTTTTGGAAAAACATGAAAACACAAAATTCTTGCTTCCACTTTTTTCCAA
187 --G-CTTCT----GTGTTTTGGAAAAACATGAAAACACAAAATTCTTGCTTCCACTTTTTTCCAA
* * *
16083 AACACTGCTTCTGTTTCCAAAATTTTTGAAAACAGAAACAGTCTGCCAAACATGTTTTCACTGTT
245 AACACTGATTCTGTTTCCAAAATTTTAGAAAACAGAAACAGCCTGCCAAACATGTTTTCACTGTT
* *
16148 TTGTTTCCAAAAACAGGAAATTGACAACAGAAAACAGGAAACAAAAACAATGCCAA
310 TTGTTTCCAAAAACAGAAAATGGACAACAGAAAACAGGAAACAAAAACAATGCCAA
16204 ACGAGCTCCT
Statistics
Matches: 331, Mismatches: 26, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
367 23 0.07
368 36 0.11
369 15 0.05
370 5 0.02
371 34 0.10
372 7 0.02
373 46 0.14
374 1 0.00
375 3 0.01
379 161 0.49
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (371 bp):
GTTTGGCATCGTTTTCGTTTTTCTGTTTTTTATTTTTGTTTCGTTTTCGTTTTGTTTTTGTTGCG
CTGTCAATTTTTTAGAAAACAAAAATCATTGTTTGGATTATACAATTTGGTTGTATGATTTTTAA
ATAAAAAAGTAAAAGAAAAAAAGTAAAAATGTATGTGAATTACTATTCATCACTGTGCTTCTGTG
TTTTGGAAAAACATGAAAACACAAAATTCTTGCTTCCACTTTTTTCCAAAACACTGATTCTGTTT
CCAAAATTTTAGAAAACAGAAACAGCCTGCCAAACATGTTTTCACTGTTTTGTTTCCAAAAACAG
AAAATGGACAACAGAAAACAGGAAACAAAAACAATGCCAAGGGGTC
Found at i:16225 original size:3 final size:3
Alignment explanation
Indices: 16217--16246 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
16207 AGCTCCTCTC
16217 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
16247 GAATTAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:19677 original size:333 final size:328
Alignment explanation
Indices: 18705--20333 Score: 1655
Period size: 333 Copynumber: 4.9 Consensus size: 328
18695 TTCGTGTAAA
* * *
18705 TTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACTAAGCATCACGGTTTTTCGCTAAAAACGCG
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAAC----CATCATGGTTTTTGGCTAAAAACGCG
* ** * * * *
18770 -TTCTGAGGATCCGGCTCAATTTTACATGATTTTTAACTCCAAGACTACTTGAAATATCTATATT
62 TTTCGGA-GCCCCGGCTCAGTTTTGCATGATTTTTAGCT-AAAGACTACTTGAAATATCTATATT
* * * * ** *
18834 CATCTAATCAAATCTTAGCCACGTTGGATTTAAAGATTTGTTTTTATAACCATCTGAATCTTGTT
125 CATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
* * * * *
18899 TCGATTTAATTATAAATTATTTCGGAAAAAAAAGGAAAAATTAACAATATTAGAAGCGTGAAAAG
190 TCGATTTAATTAGAAATAAATTCGGAAAAAAAAGG--AAA--AACGATATTAGAAGCGTGAAAAA
* * *
18964 CCCGTCAATCTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAA-AATTTAGAAA
251 CCCTTCAATTTTTTTGGCGTTGAATTATATATTTTTT-T-AGTATTGTGGCAAAGAATTGAGAAA
**
19028 AAAAAAATT--TC-G
314 AAAAATTTTGGTCAG
** ** * * * * * *
19040 -GGTT---AGTTTTTAGCCGAAAATCGTCTATTAACCATCACGGTTTTGGGCTAAACACTCGTTT
1 TTTTTGCAAAATTTTAGCCG-AAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTT
* * * * *
19101 CGGGGCCCTC-GCTCAGTTTTGCATGATTTTTACCAGAAAGACTAATTGAAATATTTATATTCAT
65 CGGAGCCC-CGGCTCAGTTTTGCATGATTTTTAGC-TAAAGACTACTTGAAATATCTATATTCAT
* * * *
19165 CTAACCAAATCCCAGCCACATTGGATTTAAGGATTTGTTTTTACAAGCATCTAAATCTTATTTCG
128 CTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCG
19230 ATTTAATTAGAAATAAATTCGGGGAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTT
193 ATTTAATTAGAAATAAATTC--GGAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTT
* * *
19295 CAATTTTTTTTGCGTTGAATTATATACTTTTTTTGGTGTTGTGGCAAAGAATTGAGAAAAAAAAA
256 CAATTTTTTTGGCGTTGAATTATATA-TTTTTTTAGTATTGTGGCAAAGAATTGAG-AAAAAAAA
19360 TTTTGGTCAG
319 TTTTGGTCAG
* * * *
19370 TTTTTGCAAAATTTTAGCCGAAATCGGGTGCTAATCATCATGGTTTTTGGCTAAAAACTCGTTTC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTTC
* * ** * * * *
19435 GGAGTCTCTACTCAGTTTTGCATGGTTTTTAGCATAAAGACTCCCTGAAATATCTAT-TTCATTT
66 GGAGCCCCGGCTCAGTTTTGCATGATTTTTAGC-TAAAGACTACTTGAAATATCTATATTCATCT
* *
19499 AACCAAATCTTAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAAT
130 AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGAT
* * * * * * *
19564 TTAATTAGAAAAAAATTCAGAAAAAAATGGAAAAAGGATATTAAAAGTGTGAAAAAAACCCTACC
195 TTAATTAGAAATAAATTCGGAAAAAAAAGGAAAAACGATATTAGAAGCGTG--AAAAACCCT-TC
* * **
19629 AATTTTTTTTTGCGTTGAATTATATGTTTTTTTAGTATTGTGGCAAAGAATTGATG--AAAACTT
257 AA-TTTTTTTGGCGTTGAATTATATATTTTTTTAGTATTGTGGCAAAGAATTGA-GAAAAAAAAT
*
19692 TTTCCGATCAG
320 TTT--GGTCAG
* * * * *
19703 TTTTTG-AAAATTTTTTTAGTCG-AATCGTGTACAAACTATCATGATTTTTTGG-TAAAAACACG
1 TTTTTGCAAAA---TTTTAGCCGAAATCGTGTACTAACCATCATG-GTTTTTGGCTAAAAACGCG
* * * * * * * * *
19765 TTCCAGAGCCCCGGTTCAGTTTTGCATTATTTTTGGTGTAAAGACTTCTTGAAATATCTGTATTA
62 TTTCGGAGCCCCGGCTCAGTTTTGCATGATTTTTAG-CTAAAGACTACTTGAAATATCTATATTC
* *
19830 ATCAAACCAAAT-TCAAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTTAATCTTGTT
126 ATCTAACCAAATCTC-AGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTT
* * * * *
19894 TCGATTTAATTAGAAATAAATTTGGAAAAAAAAAAGAAAAACAATATTAGAAGTGTGAAAACCCC
190 TCGATTTAATTAGAAATAAATTCGG-AAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCC
* * * *
19959 TTC-ATTTTCTTTGGCTTTGAGTTATATATTATTTATGAGTATTGTGG-AAAAAATTTGAGAAAA
254 TTCAATTTT-TTTGGCGTTGAATTATATATT-TTT-TTAGTATTGTGGCAAAGAA-TTGAGAAAA
* *
20022 AAACTCTTCAGGTCAG
315 AAAAT-TT-TGGTCAG
* *
20038 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGACTAAAAACGCGTTCC
1 TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTTC
* * *
20103 GGAGCCCCGACTCAGTTTTGCATGATTTTCGACGC-AAA-ACTCCTTGAAATATCTATATTCATC
66 GGAGCCCCGGCTCAGTTTTGCATGATTTT-TA-GCTAAAGACTACTTGAAATATCTATATTCATC
* *
20166 GAATCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
129 TAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGA
* ** * * * *
20231 TTTAATTAGAAATTAATTCGG-AAAAAATTGAAAAACGATTTTAGAAGCGTGAAAAGCCCGTCCA
194 TTTAATTAGAAATAAATTCGGAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAA
*
20295 TCTTTTTGGCGTTGAATTATATATTTTTTCTAAGTATTG
259 TTTTTTTGGCGTTGAATTATATATTTTTT-T-AGTATTG
20334 GCCTAAAAAC
Statistics
Matches: 1078, Mismatches: 167, Indels: 102
0.80 0.12 0.08
Matches are distributed among these distances:
325 12 0.01
326 56 0.05
327 16 0.01
328 146 0.14
329 8 0.01
330 44 0.04
331 83 0.08
332 131 0.12
333 245 0.23
334 192 0.18
335 112 0.10
336 33 0.03
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (328 bp):
TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCATGGTTTTTGGCTAAAAACGCGTTTC
GGAGCCCCGGCTCAGTTTTGCATGATTTTTAGCTAAAGACTACTTGAAATATCTATATTCATCTA
ACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATT
TAATTAGAAATAAATTCGGAAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATT
TTTTTGGCGTTGAATTATATATTTTTTTAGTATTGTGGCAAAGAATTGAGAAAAAAAATTTTGGT
CAG
Found at i:20673 original size:247 final size:246
Alignment explanation
Indices: 20113--20874 Score: 992
Period size: 248 Copynumber: 3.1 Consensus size: 246
20103 GGAGCCCCGA
* * * * *
20113 CTCAGTTTTGCATGATTTTCGACGCAAAACTCCTTGAAATATCTATATTCATCGAATCAAATCTC
1 CTCAATTTTGCATGATTTTTGGCGCAAAACTCCTTGAAATATCTATATTCATCAAACCAAATCTC
20178 AGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
66 AGCCACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* * * * * * * *
20243 TTAATTCGGAAAAAATTGAAAAACGATTTTAGAAGCGTGAAAAGCCCGTCCATCTTTTTGGCGTT
130 TTAATTCGG-AAAAATGGAAAAACGATATTAGAAGCGTAAAAAACTCTTCAATTTTTTTGGCGTT
* * ** ******* *
20308 GAATTATATATTTTTTCTAAG--TATTGGCCTAAAAACGTG-TTTCGGGTCCCGG
194 GAGTTATATATTTTTTCTCAGTTTATTGG-C-AAAAAATTGAGAAAAATTTCCGG
* * * * ** * * *
20360 TTCAGTTTTGCATGGTTTTTAGCATAAAGACTCTTTGAAATATCTTTATTCATCTAACCAAATCT
1 CTCAATTTTGCATGATTTTTGGCGCAAA-ACTCCTTGAAATATCTATATTCATCAAACCAAATCT
* ** *
20425 CAGTCACATTGAATTTAAGGATTTGTTTTTATAAGCATCT-AATCTTGTTTTGATTTAATTAGAA
65 CAGCCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* *
20489 ATAAATTCAGAAAAATGGAAAAACGATATTAGAAGCGTAAAAAACTCTTCAATTTTTTTGGCGTT
129 ATTAATTCGGAAAAATGGAAAAACGATATTAGAAGCGTAAAAAACTCTTCAATTTTTTTGGCGTT
20554 GAGTTATATATTTTTTCTCAGTTTATTGGCAAAAAATTGAGAAAAATTTCCGG
194 GAGTTATATATTTTTTCTCAGTTTATTGGCAAAAAATTGAGAAAAATTTCCGG
* *
20607 CTCAATTTTGCATGATTTTTGGCGCAAATACTCCTTAAAATATCTATATTCATCAAACCGAATCT
1 CTCAATTTTGCATGATTTTTGGCGCAAA-ACTCCTTGAAATATCTATATTCATCAAACCAAATCT
* *
20672 CAGCCACATTGGTTATAAGGATTTGTTTTTACGAGCATCTGAATCTTATTTCGATTTAATTAGAA
65 CAGCCACATTGATT-TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAA
* *
20737 ATTAATTTGGAAAAATGGAAAAACGATATTAGAAGCGTAAAAAACTCTTCAATTTTTTTGGTGTT
129 ATTAATTCGGAAAAATGGAAAAACGATATTAGAAGCGTAAAAAACTCTTCAATTTTTTTGGCGTT
*
20802 GAGTTATATATTTTTTCTCAGTTTATTGGCAAAAAATTGAGAAAAATTTTCGG
194 GAGTTATATATTTTTTCTCAGTTTATTGGCAAAAAATTGAGAAAAATTTCCGG
*
20855 CTCAATTTTGCAGGATTTTT
1 CTCAATTTTGCATGATTTTT
Statistics
Matches: 447, Mismatches: 61, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
246 75 0.17
247 145 0.32
248 227 0.51
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (246 bp):
CTCAATTTTGCATGATTTTTGGCGCAAAACTCCTTGAAATATCTATATTCATCAAACCAAATCTC
AGCCACATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
TAATTCGGAAAAATGGAAAAACGATATTAGAAGCGTAAAAAACTCTTCAATTTTTTTGGCGTTGA
GTTATATATTTTTTCTCAGTTTATTGGCAAAAAATTGAGAAAAATTTCCGG
Done.