Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011090.1 Corchorus capsularis cultivar CVL-1 contig11111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138234

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2151--2188
11
3.5
11
85
10
51
57
2
0
39
1.12
2782--2838
26
2.2
25
84
9
71
36
5
14
43
1.67
3090--3147
24
2.4
23
80
8
71
53
15
0
31
1.42
3779--3842
31
2.1
30
88
11
94
48
14
9
28
1.74
14294--14321
6
4.7
6
100
0
56
32
14
0
53
1.41
26373--26410
3
12.3
3
84
15
51
63
0
0
36
0.95
27437--27466
15
2.0
15
93
0
51
83
0
16
0
0.65
29831--29882
13
3.8
13
77
7
59
5
15
1
76
1.05
29855--29883
7
4.3
7
91
8
51
0
13
0
86
0.58
30524--30548
13
1.9
13
100
0
50
36
16
16
32
1.90
36679--36709
16
1.9
16
93
0
53
87
0
12
0
0.55
38539--38583
24
1.9
23
81
4
54
37
2
8
51
1.46
44149--44176
6
4.7
6
100
0
56
64
35
0
0
0.94
45357--45392
19
1.9
18
88
5
54
50
2
0
47
1.15
51034--51088
17
3.2
17
82
10
67
23
20
18
38
1.93
52302--52344
2
22.0
2
85
4
61
46
2
2
48
1.27
52577--52631
28
1.9
29
85
3
76
34
16
25
23
1.95
70007--70041
2
18.0
2
94
5
63
48
0
0
51
1.00
71984--72059
29
2.6
29
81
4
73
17
21
26
35
1.95
72834--72875
14
2.8
15
85
10
59
76
0
7
16
1.00
73280--73317
19
2.0
19
100
0
76
68
0
15
15
1.22
75141--75165
13
1.9
13
100
0
50
84
16
0
0
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76451--76535
41
2.0
43
90
4
138
44
4
5
44
1.49
77715--77953
78
3.2
77
90
7
359
49
0
12
37
1.44
77721--77953
70
3.2
71
85
10
310
49
0
12
37
1.45
78041--78086
6
7.8
6
92
4
76
50
0
13
36
1.41
86271--89481
321
10.0
319
79
7
3009
35
17
14
32
1.90
86271--89481
641
5.0
634
79
8
3209
35
17
14
32
1.90
90177--90206
15
1.9
16
93
6
53
53
3
0
43
1.17
90254--90579
180
1.8
180
93
2
577
46
8
8
36
1.65
94689--94976
152
1.9
152
93
1
497
38
14
10
36
1.81
95267--95560
107
2.7
109
90
5
441
37
11
1
50
1.48
96715--96776
28
2.0
31
85
14
85
54
3
3
38
1.32
114941--114970
15
2.0
15
100
0
60
33
13
13
40
1.83
119159--119220
26
2.5
24
87
10
97
58
19
0
22
1.40
119167--119220
26
2.1
26
100
0
108
59
18
0
22
1.38
119062--119380
160
2.0
160
99
0
629
42
20
5
32
1.74
119319--119380
26
2.5
24
85
10
88
58
17
0
24
1.39
119327--119382
26
2.2
26
96
0
103
60
16
0
23
1.35
123708--123741
2
17.0
2
100
0
68
50
0
0
50
1.00
125951--126036
44
2.0
42
93
6
147
23
6
8
61
1.48
126171--126231
31
2.0
31
93
0
104
22
21
22
32
1.98
126377--126406
14
2.2
13
94
5
51
90
0
10
0
0.47
134342--134448
54
2.0
54
96
0
196
47
18
16
16
1.83

Tables:   1

The End!