Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011091.1 Corchorus capsularis cultivar CVL-1 contig11112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129070

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
605--660
28
2.0
28
96
0
103
35
12
14
37
1.84
16453--16477
6
4.2
6
100
0
50
0
68
16
16
1.22
25117--25145
15
1.9
15
100
0
58
48
10
20
20
1.79
31115--31173
29
2.0
29
93
0
100
47
13
22
16
1.82
32463--32543
33
2.5
33
80
9
103
14
34
34
16
1.89
42152--42196
21
2.1
21
100
0
90
46
0
28
24
1.53
50953--51022
34
2.1
34
97
0
131
32
12
27
27
1.93
52181--52216
13
2.8
13
86
0
54
16
22
36
25
1.94
52293--52352
31
1.9
32
89
3
95
21
13
23
41
1.88
52885--52919
15
2.3
15
90
0
52
34
0
0
65
0.93
62134--62176
16
2.5
17
82
17
54
69
0
18
11
1.17
62357--62395
14
2.7
14
88
11
53
12
20
2
64
1.40
69520--69564
20
2.3
20
85
7
58
37
8
0
53
1.32
78896--78939
21
2.1
21
100
0
88
52
22
4
20
1.65
79195--79245
25
2.0
25
85
11
68
52
1
7
37
1.42
85287--85319
3
11.0
3
93
0
57
63
0
0
36
0.95
87232--87256
3
8.3
3
100
0
50
32
0
36
32
1.58
88810--88844
15
2.2
16
90
5
54
60
5
5
28
1.43
102271--102589
107
3.0
107
97
0
584
41
15
13
29
1.85
118796--118832
6
6.5
6
87
12
60
51
0
13
35
1.41
118792--118833
16
2.7
16
92
3
68
50
0
16
33
1.46
118916--119077
82
2.0
80
96
2
297
34
8
17
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
119190--119231
15
2.8
16
85
7
52
52
4
0
42
1.22
119260--119325
31
2.1
31
94
0
114
27
19
4
48
1.68
119438--119543
22
4.8
22
90
0
167
33
13
17
35
1.89
119415--119598
22
8.3
22
78
3
100
31
9
19
39
1.84
119718--120024
22
13.8
22
68
19
122
41
9
14
35
1.78
119852--119890
21
2.0
19
85
14
53
46
5
7
41
1.55
119811--120024
44
4.8
44
75
9
168
41
9
13
35
1.77
119876--120024
66
2.3
66
80
2
165
41
10
13
34
1.78
119883--120049
88
1.9
88
83
4
221
42
10
12
34
1.78
120130--120196
19
3.5
19
89
2
98
43
10
20
25
1.84
120187--120663
22
21.7
22
66
17
145
38
9
14
37
1.78
120359--120438
23
3.5
23
79
5
83
42
5
12
40
1.64
120534--120619
45
1.9
45
83
4
111
33
11
16
38
1.85
121430--121463
17
2.0
17
88
0
50
55
20
5
17
1.62
122134--122168
10
3.4
10
88
4
52
54
0
45
0
0.99
122886--122930
24
1.9
24
95
4
83
33
0
15
51
1.44
122889--122944
24
2.3
24
84
6
78
33
0
14
51
1.42
124458--124514
2
29.5
2
87
7
82
50
0
3
45
1.18
124459--124513
19
3.0
19
86
7
78
49
0
3
47
1.19
124458--124529
21
3.4
21
86
1
90
48
1
5
44
1.34
124460--124521
14
4.1
14
80
15
52
50
0
6
43
1.28
124731--124757
4
6.8
4
100
0
54
25
0
22
51
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126318--126343
12
2.2
12
100
0
52
53
7
7
30
1.57
126263--126408
79
1.8
79
91
0
238
35
19
12
32
1.89
126474--126505
16
2.0
16
100
0
64
50
12
6
31
1.65
126972--127004
12
2.8
12
90
4
50
75
0
6
18
1.00
128025--128056
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!