Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011096.1 Corchorus capsularis cultivar CVL-1 contig11117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52905

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4585--4880
109
2.7
109
90
4
441
37
10
1
50
1.48
7676--7728
27
2.0
27
92
0
88
26
15
41
16
1.88
7971--8106
72
1.9
72
84
3
184
36
11
30
20
1.89
7920--8363
168
2.6
171
82
6
481
36
13
27
21
1.92
8239--8596
105
3.4
105
96
0
646
35
17
24
22
1.95
22932--22969
11
3.5
11
89
10
51
39
0
2
57
1.12
23246--23278
17
1.9
17
100
0
66
21
0
18
60
1.36
29377--29406
15
2.1
15
93
6
53
6
20
23
50
1.71
29823--29863
21
2.0
20
85
4
55
26
26
2
43
1.67
32870--32898
10
2.9
10
100
0
58
31
0
68
0
0.89
34884--34948
31
2.1
31
85
0
85
24
12
20
43
1.86
35309--35352
13
3.4
13
74
0
52
75
6
4
13
1.17
46459--46492
17
2.0
17
100
0
68
47
17
0
35
1.48
46461--46490
15
2.0
15
93
0
51
46
16
0
36
1.47
46455--46502
21
2.3
21
92
0
78
47
16
0
35
1.47
46462--46502
17
2.4
17
88
8
57
48
19
0
31
1.49
46457--46494
19
2.0
19
94
0
67
47
18
0
34
1.49
46590--46643
28
2.0
26
85
7
72
22
7
5
64
1.40
47166--49071
331
5.7
331
81
6
1812
34
14
15
36
1.87
47453--49056
668
2.4
662
83
5
1899
33
14
15
36
1.88
49300--50194
337
2.7
333
78
7
855
33
13
15
37
1.87
50242--51808
328
4.7
330
84
5
1787
33
15
16
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50280--51808
663
2.3
659
82
6
1858
33
15
16
35
1.90

Tables:   1

The End!