Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011099.1 Corchorus capsularis cultivar CVL-1 contig11120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46327

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3901--3929
1
29.0
1
100
0
58
0
0
0
100
0.00
7037--7068
12
2.7
12
95
0
55
43
9
3
43
1.52
12425--12479
24
2.3
24
84
6
67
38
29
3
29
1.74
15501--15544
9
4.9
9
86
8
63
88
11
0
0
0.51
15500--15545
10
4.9
10
84
10
62
89
10
0
0
0.50
15500--15546
19
2.4
20
86
13
71
89
10
0
0
0.49
18419--18467
23
2.1
23
96
0
89
14
8
22
55
1.65
21538--21577
3
13.7
3
94
5
73
32
0
0
67
0.91
26337--26546
109
1.9
108
93
0
357
29
13
19
37
1.90
30241--30265
3
8.3
3
100
0
50
0
36
0
64
0.94
36908--36942
2
17.5
2
100
0
70
48
0
51
0
1.00
37230--37273
20
2.1
22
87
8
65
4
36
4
54
1.41
39725--39752
2
14.0
2
100
0
56
50
0
0
50
1.00
41821--41974
60
2.6
60
82
0
200
34
15
16
33
1.90
42012--42146
31
4.4
31
74
7
132
23
17
20
39
1.92
42046--42206
60
2.7
60
93
1
261
28
18
16
37
1.92
42077--42175
29
3.3
29
69
15
94
29
20
16
34
1.94
46134--46212
33
2.4
33
89
4
115
20
39
26
13
1.90

Tables:   1

The End!