Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011102.1 Corchorus capsularis cultivar CVL-1 contig11123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79725

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
139--165
1
27.0
1
100
0
54
0
0
0
100
0.00
21369--21684
156
2.0
156
96
0
578
31
13
28
25
1.94
22071--22234
84
2.0
84
90
0
256
38
14
26
20
1.91
28995--29023
2
14.5
2
100
0
58
51
0
0
48
1.00
29094--29169
31
2.5
31
88
0
116
30
17
2
50
1.60
29619--29679
31
2.0
31
83
6
79
29
18
3
49
1.63
31746--31893
50
3.0
52
92
5
236
39
14
8
37
1.77
32842--32903
21
3.0
21
72
9
74
22
20
19
37
1.95
32863--32919
19
3.0
19
72
10
62
21
19
21
38
1.93
32842--32919
40
2.0
39
95
5
140
21
20
20
37
1.95
34869--34911
2
21.5
2
90
9
70
48
2
0
48
1.14
44291--44452
60
2.7
59
87
3
225
34
17
21
26
1.95
44290--44452
31
5.4
30
68
21
108
34
17
21
26
1.95
44481--44676
31
6.5
30
67
14
125
25
18
19
36
1.94
44516--44736
60
3.7
60
85
2
266
28
18
16
36
1.92
44988--45021
10
3.5
10
88
4
52
2
14
0
82
0.79
47612--47644
17
1.9
17
100
0
66
27
6
36
30
1.81
49494--49527
17
2.0
17
94
0
59
23
14
14
47
1.82
54512--54540
13
2.1
14
93
6
51
24
20
6
48
1.74
54545--54569
2
12.5
2
100
0
50
0
48
0
52
1.00
59159--59218
26
2.4
24
78
8
57
30
3
1
65
1.19
64564--64607
21
2.1
21
83
8
54
18
31
9
40
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64664--64747
32
2.6
32
94
0
141
15
42
29
11
1.83
70608--70648
20
2.0
20
100
0
82
24
24
19
31
1.98
71175--71259
39
2.2
39
79
14
95
55
2
0
42
1.12
76136--79725
332
10.8
332
83
5
4223
37
14
15
32
1.88

Tables:   1

The End!