Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011105.1 Corchorus capsularis cultivar CVL-1 contig11126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58907

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5422--5449
14
2.0
14
100
0
56
42
14
14
28
1.84
12256--12315
31
1.9
31
89
0
93
38
15
11
35
1.83
13363--13424
31
2.0
32
90
3
99
33
19
6
40
1.77
14615--14685
37
1.9
37
94
0
124
36
16
8
38
1.80
14714--14773
31
1.9
31
93
0
102
38
16
11
33
1.85
31330--31354
13
1.9
13
100
0
50
76
0
24
0
0.80
39629--39678
18
2.8
18
78
0
55
18
24
50
8
1.73
42418--42442
5
5.0
5
100
0
50
80
20
0
0
0.72
45199--45230
3
11.0
3
93
6
57
65
0
0
34
0.93
48173--48208
15
2.4
15
100
0
72
61
8
11
19
1.54
51626--51683
19
2.9
20
84
5
73
36
12
20
31
1.89

Tables:   1

The End!