Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011106.1 Corchorus capsularis cultivar CVL-1 contig11127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97080

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14310--14402
45
2.1
45
95
0
168
24
11
45
18
1.83
14399--14434
18
2.0
18
88
0
54
25
8
44
22
1.80
14539--14627
21
4.1
21
86
4
97
25
15
37
21
1.93
14643--14715
33
2.2
33
85
4
94
21
9
36
31
1.86
14655--14717
33
1.9
33
93
0
108
20
11
34
33
1.88
14695--14897
21
9.2
21
80
7
199
25
13
36
24
1.92
14695--14897
45
4.6
43
80
9
189
25
13
36
24
1.92
14695--14899
66
3.1
66
88
4
290
25
13
36
24
1.92
14713--14897
87
2.1
87
92
0
307
24
13
37
24
1.91
18108--18226
62
1.9
62
92
0
202
29
12
28
29
1.93
28016--28042
2
13.5
2
100
0
54
51
0
0
48
1.00
28381--28423
22
2.0
22
100
0
86
51
13
4
30
1.62
39159--39210
20
2.6
20
90
0
86
40
30
17
11
1.85
56072--56099
14
2.0
14
100
0
56
21
28
7
42
1.79
56592--56619
14
2.0
14
100
0
56
21
28
7
42
1.79
55999--57228
523
2.4
521
93
2
2107
26
20
14
38
1.91
60568--60621
27
2.0
27
96
0
99
59
5
25
9
1.50
61706--61948
120
2.0
121
97
0
461
48
22
4
24
1.67
78800--78941
31
4.9
31
77
15
149
17
19
27
35
1.94
78858--78905
22
2.3
21
83
13
64
20
14
22
41
1.89
78805--78961
84
1.9
83
80
5
181
19
21
26
33
1.97
86384--86416
16
1.9
18
88
11
52
24
9
18
48
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96942--96985
21
2.1
21
83
8
54
22
27
11
38
1.88

Tables:   1

The End!