Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011107.1 Corchorus capsularis cultivar CVL-1 contig11128, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 58774
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:99 original size:32 final size:32
Alignment explanation
Indices: 19--104 Score: 120
Period size: 32 Copynumber: 2.7 Consensus size: 32
9 AAAATAGCCG
* * *
19 AGCCGCCCCACCGGCGCGGCCTGCCGTGGCGA
1 AGCCGCCCCATCGGGGCGGCCTGCCCTGGCGA
51 AGCCGCCCCATCGGGGCGGCCTGCCCTGGCGA
1 AGCCGCCCCATCGGGGCGGCCTGCCCTGGCGA
*
83 AGTCGCCCCAGT-GGGGCGGCCT
1 AGCCGCCCCA-TCGGGGCGGCCT
105 ATTCATAGTG
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 48 0.98
33 1 0.02
ACGTcount: A:0.09, C:0.43, G:0.38, T:0.09
Consensus pattern (32 bp):
AGCCGCCCCATCGGGGCGGCCTGCCCTGGCGA
Found at i:14176 original size:15 final size:15
Alignment explanation
Indices: 14156--14185 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14146 GAACTTCTTT
14156 GGGTTTTCCTTTTTA
1 GGGTTTTCCTTTTTA
14171 GGGTTTTCCTTTTTA
1 GGGTTTTCCTTTTTA
14186 ATGATTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.13, G:0.20, T:0.60
Consensus pattern (15 bp):
GGGTTTTCCTTTTTA
Found at i:14696 original size:1 final size:1
Alignment explanation
Indices: 14692--14721 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
14682 GAAAAAATTG
14692 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
14722 ATTTATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:21336 original size:2 final size:2
Alignment explanation
Indices: 21329--21359 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
21319 AATGAAACAG
*
21329 AC AC AC AC AC GC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
21360 TCTGTATATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.48, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:33236 original size:20 final size:20
Alignment explanation
Indices: 33211--33250 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
33201 GAGAGCGTAA
* *
33211 AAGTTACCTTTTGATATTGG
1 AAGTTACCTTCTAATATTGG
33231 AAGTTACCTTCTAATATTGG
1 AAGTTACCTTCTAATATTGG
33251 TTTATAAACT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (20 bp):
AAGTTACCTTCTAATATTGG
Found at i:33803 original size:28 final size:28
Alignment explanation
Indices: 33763--33827 Score: 121
Period size: 28 Copynumber: 2.3 Consensus size: 28
33753 TTTGTTTCCT
33763 TTTATCTTGTAGGTGATTGGGGTAGCTG
1 TTTATCTTGTAGGTGATTGGGGTAGCTG
33791 TTTATCTTGTAGGTGATTGGGGTAGCTG
1 TTTATCTTGTAGGTGATTGGGGTAGCTG
*
33819 TTGATCTTG
1 TTTATCTTG
33828 CTTAAGGAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.14, C:0.08, G:0.34, T:0.45
Consensus pattern (28 bp):
TTTATCTTGTAGGTGATTGGGGTAGCTG
Found at i:34434 original size:7 final size:7
Alignment explanation
Indices: 34422--34446 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
34412 GACTATAAAA
34422 ATATTAT
1 ATATTAT
34429 ATATTAT
1 ATATTAT
34436 ATATTAT
1 ATATTAT
34443 ATAT
1 ATAT
34447 ATTTAATTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTAT
Found at i:35191 original size:81 final size:81
Alignment explanation
Indices: 35056--35220 Score: 321
Period size: 81 Copynumber: 2.0 Consensus size: 81
35046 GTTGACATGG
*
35056 ATGATGCCGAAACCCAGTCAGGTGATGGGGCGGCCGCCCATGAGGAAGAGGAGCAGGGGGAGGAG
1 ATGATGCCGAAACCCAGTCAGGTGATGGGGCGGCCGCCCATGAGGAAGAGGAGCAGGAGGAGGAG
35121 AAGCCATATTCCAAAA
66 AAGCCATATTCCAAAA
35137 ATGATGCCGAAACCCAGTCAGGTGATGGGGCGGCCGCCCATGAGGAAGAGGAGCAGGAGGAGGAG
1 ATGATGCCGAAACCCAGTCAGGTGATGGGGCGGCCGCCCATGAGGAAGAGGAGCAGGAGGAGGAG
35202 AAGCCATATTCCAAAA
66 AAGCCATATTCCAAAA
35218 ATG
1 ATG
35221 TTATAACTAG
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.32, C:0.21, G:0.36, T:0.12
Consensus pattern (81 bp):
ATGATGCCGAAACCCAGTCAGGTGATGGGGCGGCCGCCCATGAGGAAGAGGAGCAGGAGGAGGAG
AAGCCATATTCCAAAA
Found at i:37611 original size:9 final size:9
Alignment explanation
Indices: 37597--37636 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
37587 TAATTCCTAG
*
37597 AGAAGAAGA
1 AGAAGAAAA
37606 AGAAGAAAA
1 AGAAGAAAA
*
37615 AGAA-AACA
1 AGAAGAAAA
37623 AGAAGAAAA
1 AGAAGAAAA
37632 AGAAG
1 AGAAG
37637 GGAAAGAGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.72, C:0.03, G:0.25, T:0.00
Consensus pattern (9 bp):
AGAAGAAAA
Found at i:39825 original size:335 final size:330
Alignment explanation
Indices: 39150--45422 Score: 4803
Period size: 331 Copynumber: 19.1 Consensus size: 330
39140 GCAAAAACTG
* * *
39150 TTCAAGGAGTCTTTGCGCCAACAATCATGCAAAATTGAG-CTGGGGCTCCGGAACGCGTTTTTAG
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTC-GGGGCTCCGGAACGCGTTTTTAG
* * ** * * *
39214 CCAAAAATCGTGATGGTTAGTACACGATTTCAATTAACCAAAAATTTTGCAAAAACTGACTCGGA
65 CAAAAAACCGTGATGGTTAGTACACGATTTC-----GGCTAAAATTTTGCAAAAACTGACCCGAA
* * * * **
39279 AAGTTTTTTCTC-AATTTTTTGCCACAATACTCATAAAAAATATATAATTCAACGCTAAAAAGGT
125 AATTTTTTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAAT
* * * * **
39343 TGACGGGCTTTC-CTGGCTTCTAATATCGTTTTCCCTTTTTTTCCGAATTAATTTAAAATTAAAT
190 TGA-AGGTTTTCAC--GCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAAT
* * * * * * *
39407 TGAAACAAGATTCAGATGTTCGTAAAAACAAATCCTTATATCTAATGAGGCTAATATTTGGTTCA
252 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-A
* * *
39472 -ATGAATAAAAAAAT
316 GATGAATATAGATAT
* * * * * *
39486 TTCAAGGAGTCTTTGCACCAAAAATAATGCAAAATTGAGTCGGGGTTCCAGAACGCGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * * * *
39551 CAAAAACCGTGATGGTAAGTATAGGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAAGTTT
66 AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTT
* * * * * * *
39616 TTCCTCTATTTTTTTTCCATAATAATCAGATAAAAATATATAATTTAATGCCAAACAAATTGAAG
131 TTTCTCTATTTTTTTGCCACAATACTCAGA-AAAAATATATAATTCAACGCCAAAAAAATTGAAG
* * * * *
39681 GATTTATCATGCTTCTAAAAAT-GTTTTTCTATTTTTTCCCATACTTTATTTCTAATTAAATCGA
195 G-TTT-TCACGCTTCT-AATATCGTTTTTCCATTTTTTCCGA-A-TTAATTTCTAATTAAATCGA
* *
39745 AACAAGATTCAGATACTCGTAAAAACAAATCCTTCAATCCAATGTGGCTGAGATTTGGTTAGATG
255 AACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATG
39810 AATATAGATAT
320 AATATAGATAT
* * * * * * * *
39821 TTCAAGGAGTCTTTATGCCAAAAACCATGCAAAACTAAGTCGAGGCCCCGAAACGCGTTTTCAAC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * * * * *
39886 CAAAAACCATGATGGTTAGTACCCGATTTCGGC--------T--AAAAACTTACCCGAAAAATTA
66 AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTT
* * *
39941 TTTCTC-AATTTTTTGCCACAATACTCATAAAAAATATGTAATTCAACG-CAAAAAATATTGAAG
131 TTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAA-ATTGAAG
* *
40004 GACTTTTCACGCTTCTAATATC-TTTTTCCATTTTTTTCTGAATTAATTTCTAATTAAATCAAAA
195 G--TTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTCCGAATTAATTTCTAATTAAATCGAAA
* * * * * * * * *
40068 CAAAATTAAGATGCCCGTAAAAGCAAATTCTTAAATCCAATGTGCCTGGGATTTGGTTCGATTAA
257 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAA
40133 TATAGATAT
322 TATAGATAT
* * * * * * * * * *
40142 TTCAAGAAATCTGTGCGCTATATACCATGCAAAACTGAGTCGGGG-TCCTGAACACGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * * *
40206 AAAAAAAACCCATGATGGTTAGTACACGATTTCAGCTAAAATTTTGCAAAAATTGACCC-AAAAA
66 --AAAAAA-CCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAAT
* * * *
40270 ATTTTACT-TGATTTTTTTTGCCACAATAGT-A-AAAATATATATATAATTCAACGCAAAAAAAA
128 TTTTTTCTCT-A-TTTTTTTGCCACAATACTCAGAAAA-A-ATATATAATTCAACGC-CAAAAAA
* *
40332 ACTCGAATGGTTTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTCTCGAATTTATTTCTAATTA
188 A-TTGAA-GG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTC-CGAATTAATTTCTAATTA
* * * *
40396 AATCGAAACAAGATTCAGATTCACGTAAAAACAAAT-CTGTAAATCCAATGTGACTGATATTTGG
249 AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCT-TAAATCCAATGTGGCTGAGATTTGG
*
40460 TTAGATAAATATAGATAT
313 TTAGATGAATATAGATAT
* * * *
40478 TTCAAGGAGTCTTT-CTG-C------CATGCAAAACTGAGTCGAGGCCCCGAAATGCGTTTTTAG
1 TTCAAGGAGTCTTTAC-GCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAG
* * *
40535 CAAAAAAAAACCATGAT-GTTGGTACACGATTTCGGCT-AAA----GC-----CTAACCCG--AA
65 C---AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAA
* * * * * * *
40587 TTTTTTTTTCAGACTTTCTTGCCATAATACTCAGAAATAAA-ATATAATTCAATG-CAAAAAGAT
127 TTTTTTTCTC-TATTTTTTTGCCACAATACTCAGAAA-AAATATATAATTCAACGCCAAAAAAAT
** * *
40650 TGGCGGACTTTCCACGCTTCTAATATCGTTTTTCCATTTTTTCCCAAATTAATTTCTAATTAAAT
190 TGAAGG--TTTTCACGCTTCTAATATCGTTTTTCCATTTTTT-CCGAATTAATTTCTAATTAAAT
* * * * ** *
40715 CGACACAAGATTCAAATGCTCGTTAAAACAAATACTTTTATCCAATGTGACTGAGATTTGGTTCA
252 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-A
40780 -ATGAATATAGATAT
316 GATGAATATAGATAT
* * * *
40794 TTCAAGAAGTCTTTATGCCAAAAATCATGCAAAACTGAGCCGGGGC-CTGGGAACGC-TTTTCTA
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTC-CGGAACGCGTTTT-TA
* * * * *
40857 -TAAAAAATCGTGATGGTTAGTACATGATTTCGGCTAAAATTTTGCAGAAACTGACCCGAAAAAT
64 GCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATT
* * * *
40921 TTTTACT-TAATTATTTTGCCACAATAGTCAGAAAAAATATATAATTCAACGCAAAAAGGAAAAA
129 TTTTTCTCT-ATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGC--CAA--AAAAA
* * * * * *
40985 TTGAATGGTTTTTCATGCTTGTATTATCGTTTTTCCATTTTTTTCGAATTTATTTCAAATTAAAT
189 TTGAA-GG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAAT
* * *
41050 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGGCTGAGATTTGATTCG
252 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAG
41115 ATGAATATAGATAT
317 ATGAATATAGATAT
* ** * * * ** * *
41129 TTCAAGGAGACTTTTTGCCAAAAATCATGCAAAATTGAGTCGGCGCCCCAAAATGTGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAG-
* * *
41194 CCCAAAAAAAAAAAAAACCATGAT-G-T-GTACACAATTTCGGC--------T--AAAAACTAAC
65 --C--------AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGAC
* ** * ** * * * *
41246 TCG-ATTTTTTTTTTTAAAGAATTCTTGGCCACAATACTCAGAAACAATATATAATTCAACGCCA
120 CCGAAAATTTTTTTCT--CTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
* * * * *
41310 AAAAGATTGACGGGCTTTCCAGGCTTCTAATATCGTTTTTCCA-TTTATCCTGAATTAATTTCTA
183 AAAAAATTGA-AGG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCC-GAATTAATTTCTA
* * * * *
41374 ATTAATTCGAAACAAGATTCAGATACACGTAAAAACAAATACTTACATCCAATGTGGCT-AGGAT
245 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA-GAT
* *
41438 TTGATTCGATGAATATAGATAT
309 TTGGTTAGATGAATATAGATAT
* * * *
41460 TTC-AGGAAGTCATTACGCCAAAAATCATGCAGAACTGAG-CTGGGG-TCCCGAAACGCATTTTT
1 TTCAAGG-AGTCTTTACGCCAAAAATCATGCAAAACTGAGTC-GGGGCT-CCGGAACGCGTTTTT
* *
41522 AGCAAAAAACCGT-A-----ACGTACACGATTTCAGCTAAAATTTTGAAAAAACTGACCCG-AAA
63 AGCAAAAAACCGTGATGGTTA-GTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAA
* * * *
41580 TATTTTTACT-TAAATTTTTTT-CCACAATATTCAGAAAAAATATATAATTCAATGCAAGAAAAA
127 T-TTTTTTCTCT--ATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA-AAAAA
* * * * * * *
41643 ATTAAATGGTTCTTCACGCTACTAATATAGTTTTTCCAATTTTGCCGAATTTATTTATAATTAAA
188 ATTGAA-GGTT-TTCACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAA
* * *
41708 TCGAAACAAGATTAAGATGCTCATAAAAACAAAACCTTAAATCCAATGT-GCATGAGATTTGGTT
251 TCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGC-TGAGATTTGGTT
*
41772 AGATAAATATAGATAT
315 AGATGAATATAGATAT
* * * * * * *
41788 TTCAAGTGAGT-TTTTCTGCCAAAAATCATGCAAAAGTGAGGCGGAGC-CACGAAACACATTTTT
1 TTCAAG-GAGTCTTTAC-GCCAAAAATCATGCAAAACTGAGTCGGGGCTC-CGGAACGCGTTTTT
* ** *
41851 AGC-CAAAACC---ATGGTTAGTTTACAATTTCGGC--------T--AAAAACTGACCCGAAAAT
63 AGCAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAAT
* * * * **
41902 TTTTTTAT-GATTTTTTTGCCACAATACTCAGAAATAATATATAATTCAACACCAAAATGATTGA
128 TTTTTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGA
* * * * * *
41966 CGGCCTTTCCACG---CT--T-TCG-TTTTCCATTTTTTCTTGAAATAATTTATAATTAAACCGA
193 AGG--TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTC-CGAATTAATTTCTAATTAAATCGA
* ** * * **
42024 AATAAGATTCACTTGC-CAGTAAAAACAAATCCTTATATCCAATGTGTCTGAGATTTATTTCA-A
255 AACAAGATTCAGATGCTC-GTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT-AGA
42087 TGAATATAGATAT
318 TGAATATAGATAT
* * * * * *
42100 TTCAAGGAGTTTTTGCGTCAAAAATCATGTATAATTGAGTCGGGGCTCCGGAACGGCGTTTTTAG
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAAC-GCGTTTTTAG
* * * * ** * * * *
42165 CCAAAAACCGTGATGATTAATACATGATTTCAACTAAAAGTTTGTAAAAACTGACTCGAAAACTT
65 CAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTT
* * * * * *
42230 TTTCCT-TAATTTTTCGCCTCAATACTTAGAAAAAATATATAATTCAACGCCAAAAAAATTAAAC
130 TTTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA-
* * *
42294 GGTTTGTCAAGCTTCTAATATCCTTTTTTCATTTTTCTTCCGAATTAATTTCTAATTAAATCGAA
194 GGTTT-TCACGCTTCTAATATCGTTTTTCCA-TTTT-TTCCGAATTAATTTCTAATTAAATCGAA
* * * * * * * *
42359 ACAAGATTAAGATACTCAT-AAAA-AAATCCTTAAATGCAATGTGGTTGGGATTTGATTCGATGA
256 ACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGA
42422 ATATAGATAT
321 ATATAGATAT
* * * *
42432 TTCAAGAAGTCTTTACGCCAAAAATCATGCAAAACTGAGCCGGGGCTCCGGAACACGATTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* *
42497 AAAAAAACCATGATGATTAGTACACGATTTCGGC--------T--AAAAACTGACCCG-AAATTT
66 -AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTT
* ** * * *
42551 TTTTCTCAGATTCGTTTGCCACAATACTCAGAAATAATATATAATTCAATGCCAAAAAGATTGAC
130 TTTTCTC-TATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGA-
* * ** * * *
42616 GGGTTTTTCACGCTTCTAATATCATTTTTTCTTTTTCTTTTTCGAATTAATTTCTATTTAAATTG
193 AGG-TTTTCACGCTTCTAATATC-GTTTTTC-CATT-TTTTCCGAATTAATTTCTAATTAAATCG
* * * * *
42681 AAACAATATTTAGATGCTCATAAAAACAAATACTTAAATCTAATGTGGCT-AGGATTTGGTTAGA
254 AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA-GATTTGGTTAGA
42745 TGAATATAGATAT
318 TGAATATAGATAT
* * * * * * * * *
42758 TTCTAGAATTTTTTAAG-CAAGAAATCATGCAAAACGGAGCCGAGGCCCCGGAACGCGTTTTTAG
1 TTCAAGGAGTCTTTACGCCAA-AAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAG
* * * * *
42822 CAAAAAACAGTGATGGTTAG-ATTACGATTTCAGCTAAAATTTTGCAAAAACTGAAACCGAAAAA
65 CAAAAAACCGTGATGGTTAGTA-CACGATTTCGGCTAAAATTTTGCAAAAACTG-ACCCGAAAAT
* * ** * ** *
42886 TGTTTACT-TAATTTTTTTTGCCACAATTGTGAGAAAAAATATATAATTCAATTCAAGAAAAAAT
128 TTTTTTCTCT-A-TTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA-AAAAAAT
* * *
42950 TGAATGGCTTTTCACGCTACTAATATCGTTTTTCCATTTTTTTCCGAATTTATTTATAATTAAAT
190 TGAA-GG-TTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTCCGAATTAATTTCTAATTAAAT
* * * *
43015 CGAAACAAGATT-A-A-G---ATAAAAACAAAACCTTGAATCCAATGTGCCTGAGATTTGGTTAG
252 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAG
* *
43074 ATAAATATAGACAT
317 ATGAATATAGATAT
* * * *
43088 TTCAAGTGAGTCTTT-CTGCCAAGAATCATGCAAAACTGAGCCGGAGC-CACGAAACGCGTTTTT
1 TTCAAG-GAGTCTTTAC-GCCAAAAATCATGCAAAACTGAGTCGGGGCTC-CGGAACGCGTTTTT
** * *
43151 AGCCAAAAAAAACC---ATGGTTAGTTTACAATTTCGGC--------T--AAAAACTGAACC--A
63 AG-C--AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAA
* * * * * *
43201 ATTTTTTTTTTCTGTTTTTATTGCCACAATACTC-GGAAATA-ATATAATTCAACGCCAAAGAAA
125 AATTTTTTTCTCTATTTTT-TTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAA
* *
43264 TTGACGGTCTTTCCACGCTTCTAATATCGTTTTTCCATTTTTTTCCTAAATTAATTTCTAATTAA
189 TTGAAGGT-TTT-CACGCTTCTAATATCGTTTTTCCA-TTTTTTCC-GAATTAATTTCTAATTAA
* * * * ** *
43329 ATCGAAATAAGATTCAGTTGCTAGTAAAAACAAATCCTTATATCCAATGTGATTGAGATTTGTTT
250 ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTT
*
43394 AGATGAGTATAGATAT
315 AGATGAATATAGATAT
* * * * *
43410 TTCAAGGATTTTTTACGCAAAAAATCATGCAAAATTGAGTTGGGGCTCCGGAACGCGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * * * * *
43475 CAAAAACCGTGATGGTTAGTACATGATTTCAGATAAAATTTTGCAAAAACTGACTCGAAAACTTT
66 AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTT
* ** * * *
43540 TTCCT-TAAATTTTTGCCTCAATGCTTAGAAAAAATATATAATTCAACGCCAAAAAAATTGAACG
131 TTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA-G
* * * *
43604 GTTTTTCAAGCTTCTAATATCCTTTTTTCATTTTTCTTCTGAATTAATTTCTAATTAAATCGAAA
195 G-TTTTCACGCTTCTAATATCGTTTTTCCA-TTTT-TTCCGAATTAATTTCTAATTAAATCGAAA
* * * * * *
43669 CAAGATTAAGATGCTCGTAAAAACAAATACTTAAATGCAATGTGACT-AGGATTTGATTCGATGA
257 CAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA-GATTTGGTTAGATGA
* **
43733 ATGTTCATAT
321 ATATAGATAT
* * * * * *
43743 TTCAAGTAGTCTTTTCACCAAAAATCATGCAAAACTGAGCCGAGACTCCGGAACGCGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * * * **
43808 AAAAAAAAAAAACCATGATGATTACTACACGATTTCAGC---AA------AAAAACTTCCCCGAA
66 ------AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAA
* * * * * *
43864 AA-TTTTTTCTCAGATTCTTTTACCACAATACTCAGAAATAATATATAATTCAATGTCAAAAAAA
125 AATTTTTTTCTC-TATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAA
* * * *
43928 TTGACGGGTTTTCCACGCTTCTAACATCGTTTTTCCTTTTTTTTTCCGAATTAATTTCTATTTAA
189 TTGA-AGGTTTT-CACGCTTCTAATATCGTTTTTCC--ATTTTTTCCGAATTAATTTCTAATTAA
* * * *
43993 ATCGAAACAAGATTTAGATGCTTGTAAAAACAAATACTTAAATCCAATGTGGCT-AGGATTTGAT
250 ATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGA-GATTTGGT
*
44057 TCGATGAATATAGATAT
314 TAGATGAATATAGATAT
* * * * *
44074 TTCTAGAATTTTTTACGCCAAAAATCATGCAAAACTGAG-CTGAGG-TCCCGGAACGCGTTTTTA
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTC-GGGGCT-CCGGAACGCGTTTTTA
* *
44137 GCAAAAAAACCGTGATGGTTAG-ATTACGATTTCAGCTAAAATTTTGCAAAAACTGACCCGAAAA
64 GC-AAAAAACCGTGATGGTTAGTA-CACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAA
* ** * * ** * * *
44201 ATTAATACT-TAATTTTTTTGCCATAATTGTGAGAAAAAAATATATAATTCAATGCAAGAAAAAA
127 TTTTTTTCTCT-ATTTTTTTGCCACAATACTCAG-AAAAAATATATAATTCAACGCCA-AAAAAA
* * * *
44265 TTGAATGGTTTTTCACGCTACTAATATCGTTTTTCCATTTTCTCCGAATTTATTTATAATTAAAT
189 TTGAA-GG-TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAAT
* * * * * *
44330 CGAAACAAGATTCAAATGCTCATAAAAACAAAACCTTGAATCCAATGTGCCTGAGATTTGCTTAG
252 CGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAG
* *
44395 ATAAATATAGATAA
317 ATGAATATAGATAT
* * * * *
44409 TT-AAGGTGAGTCTTT-CTGCCAAGAATCATGCAAAACTGAGCCGGAGC-CACGAAACACGTTTT
1 TTCAA-G-GAGTCTTTAC-GCCAAAAATCATGCAAAACTGAGTCGGGGCTC-CGGAACGCGTTTT
* ** * * * *
44471 TAGCCAAAAAACC---ATGGTTTGTTTACAATTTCGGC--------T--AAAAACTTAACCGAAT
62 TAG-CAAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAA
* * * *
44523 TTTTTTTTCTCT-TTTTATTGCCACAATACTCTGAAATAATATATAATTCAACGCCAAAAAAATT
126 ATTTTTTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATT
* *
44587 -AACGGCCTTTCCACGCTTCTAATATCGTTTTTCCATTTTTTTCCTGAATTAATTTCTAACTAAA
191 GAA-GG--TTTTCACGCTTCTAATATCGTTTTTCCA-TTTTTTCC-GAATTAATTTCTAATTAAA
* * * ** * *
44651 TCGAAACAAGATTCAGATGCTAGTAAAAATAAATCCTTATATCCAATGTGATTGAGATTTGTTTC
251 TCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTA
*
44716 GATGAATATAGACAT
316 GATGAATATAGATAT
* * * *
44731 TTCAAGGAGTTTTTACGGCAAAAATCATGCAAAATTGAGTCGGGGCTCCGAAACGCGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
* * * * * * * * * *
44796 TAAAAACCGTGATGATTAGTACATGATGTCCGATGAAATTTTGCAAAAACTAACTCGAAAACTTT
66 AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTT
* * * * * * *
44861 TTCCT-TAATTTTTTGCCTA-AATGCTTAGAAAAGATATATGATTCAACACCAAAAAAATTGAAC
131 TTTCTCTATTTTTTTGCC-ACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAA-
* * * * *
44924 GGTTTTTCAAGCTTTTAATATCCTTTTTTCATTTTTCTTCCGAATTAGTTTCTAATTAAATCGAA
194 GG-TTTTCACGCTTCTAATATCGTTTTTCCA-TTTT-TTCCGAATTAATTTCTAATTAAATCGAA
* * * * * *
44989 ACAAGATTAAGATGCTCGTAAAAACAAATCCTTATATGCAATGTGGCTGGGATTTGATTCGATGA
256 ACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGA
45054 ATATAGATAT
321 ATATAGATAT
* *
45064 TTCAAGAAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCAGGGCTCCGGAACGCGTTTTTAGC
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
** * * *
45129 AAAGAAAACAATGATGATTAGTACACGATTTCGG----------GTAAAAACTGACCTGAAAATT
66 -AA-AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATT
* * * * *
45184 TTTTTCTCAGATTTTTTT----C----CTC----AATATATATAATTTAATGCCAAAAAGATTGA
129 TTTTTCTC-TATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGA
* * * * * * * *
45237 CGGGATTTCCACGCTTTTGATATTGTTTTTCCTTTTTTTTTCCGAATTAATTTCTATTTAAATCA
193 -AGG-TTTTCACGCTTCTAATATCGTTTTTCC--ATTTTTTCCGAATTAATTTCTAATTAAATCG
* * * **
45302 AAACAAGATTTAGATGCTCGTAAAAACAAATACTTAAATCCAATGTGGCTGGGATTTGGTTCTAT
254 AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGAT
45367 GAATATAGATAT
319 GAATATAGATAT
* * * *
45379 TTCAAGAAATCTTTACGCCAAAAATAATGCAAAACTGAGACGGG
1 TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGG
45423 ATTTTTCATG
Statistics
Matches: 4749, Mismatches: 866, Indels: 665
0.76 0.14 0.11
Matches are distributed among these distances:
311 46 0.01
312 101 0.02
313 10 0.00
314 7 0.00
315 254 0.05
316 168 0.04
317 18 0.00
318 91 0.02
319 61 0.01
320 110 0.02
321 279 0.06
322 199 0.04
323 188 0.04
324 78 0.02
325 87 0.02
326 195 0.04
327 46 0.01
328 148 0.03
329 106 0.02
330 129 0.03
331 552 0.12
332 177 0.04
333 530 0.11
334 114 0.02
335 500 0.11
336 368 0.08
337 101 0.02
338 33 0.01
339 27 0.01
344 13 0.00
345 1 0.00
346 1 0.00
347 11 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (330 bp):
TTCAAGGAGTCTTTACGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCGGAACGCGTTTTTAGC
AAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGCAAAAACTGACCCGAAAATTTT
TTTCTCTATTTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAAAAAAATTGAAGG
TTTTCACGCTTCTAATATCGTTTTTCCATTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAG
ATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGGTTAGATGAATATA
GATAT
Found at i:45455 original size:177 final size:177
Alignment explanation
Indices: 45269--45588 Score: 500
Period size: 177 Copynumber: 1.8 Consensus size: 177
45259 TTGTTTTTCC
* * *
45269 TTTTTTTTTCCGAATTAATTTCTATTTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAAT-
1 TTTTTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCCTAAAAACAAATC
* * *
45333 ACTTAAATCCAATGTGGCTGGGATTTGGTTCTATGAATATAGATATTTC-AAGAAATCTTTACGC
66 A-TTAAATCCAATGTGGCTGGGATTTGGTTCGATAAATATAGATATTTCAAAG-AACCTTTACGC
45397 CAAAAATAATGCAAAACTGAGACGGGATTTTTCATGCTTCTAATATCGT
129 CAAAAATAATGCAAAACTGAGACGGGATTTTTCATGCTTCTAATATCGT
* * *
45446 TTTTTTTTTCCGAATTAGTTTCTAATTAAATCAAAACAAGATTCATATGCTCCTAAAAATAAATC
1 TTTTTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCCTAAAAACAAATC
* *
45511 ATTAAATCGAATGTGGCTGGGATTTGGTTCGATAAATATAGATATTTCAAAGAGCCTTTACGCCA
66 ATTAAATCCAATGTGGCTGGGATTTGGTTCGATAAATATAGATATTTCAAAGAACCTTTACGCCA
*
45576 AAAATCATGCAAA
131 AAAATAATGCAAA
45589 TACAAATACT
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
177 125 0.97
178 4 0.03
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (177 bp):
TTTTTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCCTAAAAACAAATC
ATTAAATCCAATGTGGCTGGGATTTGGTTCGATAAATATAGATATTTCAAAGAACCTTTACGCCA
AAAATAATGCAAAACTGAGACGGGATTTTTCATGCTTCTAATATCGT
Found at i:50022 original size:2 final size:2
Alignment explanation
Indices: 50015--50046 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
50005 CAGTGAAAAT
50015 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50047 CTAATTAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:55553 original size:80 final size:80
Alignment explanation
Indices: 55415--55656 Score: 457
Period size: 80 Copynumber: 3.0 Consensus size: 80
55405 CTTATCTTAC
* *
55415 TATCCTACTACTATATAAAATTACGAAGTCAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
1 TATCTTACTACTATATAAAATCACGAAGTCAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
55480 AGTATTATAGTATAG
66 AGTATTATAGTATAG
*
55495 TATCTTACTACTATATAAAATCACGAAGACAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
1 TATCTTACTACTATATAAAATCACGAAGTCAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
55560 AGTATTATAGTATAG
66 AGTATTATAGTATAG
55575 TATCTTACTACTATATAAAATCACGAAGTCAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
1 TATCTTACTACTATATAAAATCACGAAGTCAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
55640 AGTATTATAGTATAG
66 AGTATTATAGTATAG
55655 TA
1 TA
55657 ATTTTTTAAA
Statistics
Matches: 158, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 158 1.00
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.33
Consensus pattern (80 bp):
TATCTTACTACTATATAAAATCACGAAGTCAAAAATTCTAATTAGGAAATTTCATAAATACCCTA
AGTATTATAGTATAG
Found at i:58639 original size:651 final size:647
Alignment explanation
Indices: 57358--58727 Score: 1538
Period size: 651 Copynumber: 2.1 Consensus size: 647
57348 TTGGCCTCAG
57358 CTCAGTTTTGCATGATTTTTGGCGTAAA-ATCTCCTTGAAATATCTATATTCATCGAACTAAATA
1 CTCAGTTTTGCATGATTTTTGGCGTAAAGAT-TCCTTGAAATATCTATATTCATCGAACTAAATA
* * * * ** * *
57422 CCAGCCACATTCAATTTAAGTATTTGTTTTAACAAGTATCTGAATCTTCTTTCGATTTAGTTAGA
65 CCAGCCACATTCAATATAAGGATTTCTTTTAACAAGCATCAAAATCTTCTTTCAATTTAATTAGA
* * * * *
57487 AATTAATTCGAAAAAAATGGAAAAACAATATTAGAAGTATGAAAAACCCTTTAATCTTTTTGGTG
130 AATTAATTCGAAAAAAATGGAAAAACAATATTAGAAGCATGAAAAACCATTCAATCTTATTGGCG
* *
57552 TTAAATTATATATTTTTCATGAGTATTGTGGCAAAATTAAGAAAAAAAAAATTTGGGTCAGTTTG
195 TTAAATTATATATTTTTCATGAGTATTGTGCCAAAAATAAGAAAAAAAAAATTTGGGTCAGTTTG
* * * * *
57617 TAGCCGAAATCGGGTACTAACCATCACTGTTTTTTTGACACAAAACACGTTTCAGGGTCTCGACT
260 TAGCCAAAATCGGGTACTAACCATCACTGATTTTTGGACACAAAACACGTTTCAGGGACGCGACT
* * * *
57682 CAGTTTTGCATTGTTATTGGCATAAAGACTTCTTGAAATATATATATTCATCTAACCAAATCTCA
325 CAGTTTTGCATTGTTATTAGCAGAAAGACTCCTTAAAATATATATATTCATCTAACCAAATCTCA
* * * * *
57747 GTCATATTGGATTTAAGGATTTGTTTTTACGAGCATATGAATCTTGTTTCGATATATTAGAAATA
390 GCCATATTAGATTTAAGGATTTGATTTTACGAGCATATAAATCTTGTTTCAATATATTAGAAATA
*** *
57812 AATTCGGAAAAAAATGCGAAAATGATATTAGAAGTGTGAAAACCCCTTCAGCTTTTTTGGCGTTA
455 AATTCGGAAAAAAATGCGAAAATGATATTAGAAACCTGAAAAACCCTT---CTTTTTTGGCGTTA
* * * *
57877 AATTATATTTTTTTTCTAATTATTGTGGCAAAAAATTGAGGAAAAACTTTTTGGAAAAGTTTTTG
517 AATTAAATATTTTTTATAACTATTGTGGCAAAAAATTGAGGAAAAACTTTTTGGAAAAGTTTTTG
* * * * * * *
57942 CAAATTTTTAGCCGAAATCGTTTACTACCATCACAGTTTAGCTAAAAAC-GTGTTTC-GGAGCCA
582 CAAAATTTTAACCGAAATCATGTAATACCATCACAGTTTAGCT-AAAACTATGTTCCAGGAGCC-
*
58005 TGA
645 CGA
* ** * * * *
58008 CTCAATTTTGCATGATTTTTGATGCAAAGATTCTTTGAAATATCTATATTCATTGAACTAAATAT
1 CTCAGTTTTGCATGATTTTTGGCGTAAAGATTCCTTGAAATATCTATATTCATCGAACTAAATAC
** * *
58073 CAGCCACATTGGATATAAGGATTTCTTTT-ACGAGCATCAAAATCTTGTTTCAATTTAATTAGAA
66 CAGCCACATTCAATATAAGGATTTCTTTTAACAAGCATCAAAATCTTCTTTCAATTTAATTAGAA
** * *
58137 ATTAATTCGGAAAAAAATTGGAAAAATGATATTAGAAGCGTG-AAAAGCATGTCAATCTTATTGG
131 ATTAATTC-GAAAAAAA-TGGAAAAACAATATTAGAAGCATGAAAAACCAT-TCAATCTTATTGG
* * *
58201 CGTTGAATTCTATATTTTTTC-TGAGTATTGTGCCAAAAAATACAG-AAAAATAAATTTCGGGTC
193 CGTTAAATTATATA-TTTTTCATGAGTATTGTGCC-AAAAATA-AGAAAAAAAAAATTT-GGGTC
* * * * **
58264 AGTTTTTA-CCAAAATCGTGTACGTTACCATCAC-GATTTTTGGGCTA-AAAATGCGTTTC-GGG
254 AGTTTGTAGCCAAAATCGGGTAC-TAACCATCACTGATTTTTGGAC-ACAAAACACGTTTCAGGG
* * * *
58325 ACGCGTCTCAGTTTTGCA-TGATTTTTAGCAGAAAGACTCCTTAAAATATCTATATTCATCTAAT
317 ACGCGACTCAGTTTTGCATTG-TTATTAGCAGAAAGACTCCTTAAAATATATATATTCATCTAAC
* * * *
58389 CAAATCTCAGCCATATTAGATTTAA-GCTTTCGATTTTACGAGTATCTAAATCTTGTTTCAATTT
381 CAAATCTCAGCCATATTAGATTTAAGGATTT-GATTTTACGAGCATATAAATCTTGTTTCAATAT
* *
58453 AATTAGAAATATATTCGGAAAAAAA-G-GAAAAATGATATTTGAAACCTGAAAAACCCTT-TTTT
445 -ATTAGAAATAAATTCGGAAAAAAATGCG-AAAATGATATTAGAAACCTGAAAAACCCTTCTTTT
* * *
58515 TT-GCGTTGAATTAAATATTTTTTATGACTATTGTGGCAAAAAAAATTGA-GAAAAATTTTTTGG
508 TTGGCGTTAAATTAAATATTTTTTATAACTATTGTGGC--AAAAAATTGAGGAAAAACTTTTTGG
*** * * * *
58578 GTCAGTTTTTGCAAAATTTTAACTGAAATCATGTAATAAGCATCACGGGTTTTTTGCTAAAACTA
571 AAAAGTTTTTGCAAAATTTTAACCGAAATCATGTAAT-ACCATCAC-AG--TTTAGCTAAAACTA
*
58643 TGTTCCAGGAGCCCGG
632 TGTTCCAGGAGCCCGA
* * *
58659 CTCAGTTTTGCATGA-TTTTGGCGTAAAGAATCCATGAAATATCTATATTCATCGAACCAAAT-C
1 CTCAGTTTTGCATGATTTTTGGCGTAAAGATTCCTTGAAATATCTATATTCATCGAACTAAATAC
58722 CAGCCA
66 CAGCCA
58728 AATTAGATTT
Statistics
Matches: 598, Mismatches: 100, Indels: 45
0.80 0.13 0.06
Matches are distributed among these distances:
646 29 0.05
647 47 0.08
648 17 0.03
649 43 0.07
650 144 0.24
651 212 0.35
652 82 0.14
653 24 0.04
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (647 bp):
CTCAGTTTTGCATGATTTTTGGCGTAAAGATTCCTTGAAATATCTATATTCATCGAACTAAATAC
CAGCCACATTCAATATAAGGATTTCTTTTAACAAGCATCAAAATCTTCTTTCAATTTAATTAGAA
ATTAATTCGAAAAAAATGGAAAAACAATATTAGAAGCATGAAAAACCATTCAATCTTATTGGCGT
TAAATTATATATTTTTCATGAGTATTGTGCCAAAAATAAGAAAAAAAAAATTTGGGTCAGTTTGT
AGCCAAAATCGGGTACTAACCATCACTGATTTTTGGACACAAAACACGTTTCAGGGACGCGACTC
AGTTTTGCATTGTTATTAGCAGAAAGACTCCTTAAAATATATATATTCATCTAACCAAATCTCAG
CCATATTAGATTTAAGGATTTGATTTTACGAGCATATAAATCTTGTTTCAATATATTAGAAATAA
ATTCGGAAAAAAATGCGAAAATGATATTAGAAACCTGAAAAACCCTTCTTTTTTGGCGTTAAATT
AAATATTTTTTATAACTATTGTGGCAAAAAATTGAGGAAAAACTTTTTGGAAAAGTTTTTGCAAA
ATTTTAACCGAAATCATGTAATACCATCACAGTTTAGCTAAAACTATGTTCCAGGAGCCCGA
Done.