Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011110.1 Corchorus capsularis cultivar CVL-1 contig11131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 152610
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:297 original size:29 final size:29
Alignment explanation
Indices: 255--310 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
245 CAGAACGGTG
255 AGTGATTCGAAAACCTCCCTGATTGATTC
1 AGTGATTCGAAAACCTCCCTGATTGATTC
284 AGTGATTCGAAAACCTCCCTGATTGAT
1 AGTGATTCGAAAACCTCCCTGATTGAT
311 CCGAAAATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (29 bp):
AGTGATTCGAAAACCTCCCTGATTGATTC
Found at i:456 original size:31 final size:31
Alignment explanation
Indices: 421--485 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
411 AACTGAACAA
421 ACTCAAACATCCAAGATCTAAAGATCTGGAG
1 ACTCAAACATCCAAGATCTAAAGATCTGGAG
452 ACTCAAACATCCAAGATCTAAAGATCTGGAG
1 ACTCAAACATCCAAGATCTAAAGATCTGGAG
483 ACT
1 ACT
486 GATAACCCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.20
Consensus pattern (31 bp):
ACTCAAACATCCAAGATCTAAAGATCTGGAG
Found at i:3743 original size:31 final size:31
Alignment explanation
Indices: 3705--3778 Score: 130
Period size: 31 Copynumber: 2.4 Consensus size: 31
3695 TCCAAAATAA
*
3705 GCCCAATTTGGTGCACTTTGCTAACGTTTAG
1 GCCCAATTTGGTGCACTTTACTAACGTTTAG
*
3736 GCCCAATTTGGTGCATTTTACTAACGTTTAG
1 GCCCAATTTGGTGCACTTTACTAACGTTTAG
3767 GCCCAATTTGGT
1 GCCCAATTTGGT
3779 CTTGTTTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (31 bp):
GCCCAATTTGGTGCACTTTACTAACGTTTAG
Found at i:8329 original size:74 final size:74
Alignment explanation
Indices: 8208--8355 Score: 278
Period size: 74 Copynumber: 2.0 Consensus size: 74
8198 CTAGAGACTC
*
8208 CACATTTCCACTATAAACATTCTTGTGCATCTCTTGCCTACAGCAACAACCAACCCCCAAACCCA
1 CACATTTACACTATAAACATTCTTGTGCATCTCTTGCCTACAGCAACAACCAACCCCCAAACCCA
8273 ACCCCTAAA
66 ACCCCTAAA
*
8282 CACATTTACACTATAAACATTCTTGTGCATCTCTTGCCTACAGCAACAACCCACCCCCAAACCCA
1 CACATTTACACTATAAACATTCTTGTGCATCTCTTGCCTACAGCAACAACCAACCCCCAAACCCA
8347 ACCCCTAAA
66 ACCCCTAAA
8356 AAATTGGACT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.34, C:0.39, G:0.05, T:0.22
Consensus pattern (74 bp):
CACATTTACACTATAAACATTCTTGTGCATCTCTTGCCTACAGCAACAACCAACCCCCAAACCCA
ACCCCTAAA
Found at i:8487 original size:5 final size:5
Alignment explanation
Indices: 8477--8502 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8467 CTAGTTTAAA
8477 CACCC CACCC CACCC CACCC CACCC C
1 CACCC CACCC CACCC CACCC CACCC C
8503 CTCTTCTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.81, G:0.00, T:0.00
Consensus pattern (5 bp):
CACCC
Found at i:9462 original size:17 final size:17
Alignment explanation
Indices: 9437--9469 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9427 ATAGAGAGAC
*
9437 AATAGAATATGAAGAAG
1 AATAAAATATGAAGAAG
9454 AATAAAATATGAAGAA
1 AATAAAATATGAAGAA
9470 TGGGAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (17 bp):
AATAAAATATGAAGAAG
Found at i:14727 original size:1 final size:1
Alignment explanation
Indices: 14721--14746 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
14711 CTCGGCGAGA
14721 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
14747 CAACGCAAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:17261 original size:20 final size:20
Alignment explanation
Indices: 17236--17273 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
17226 TATATATATC
*
17236 CAACTAAAATTGCATTATTG
1 CAACTAAAATTGAATTATTG
17256 CAACTAAAATTGAATTAT
1 CAACTAAAATTGAATTAT
17274 ATATATCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.13, G:0.08, T:0.34
Consensus pattern (20 bp):
CAACTAAAATTGAATTATTG
Found at i:28254 original size:90 final size:90
Alignment explanation
Indices: 28100--28288 Score: 308
Period size: 90 Copynumber: 2.1 Consensus size: 90
28090 TCTATGTTTT
* *
28100 TGTAATTGTAATGTTGCCATCAATTTTCTATCAAAATATCCTAACTGACTTAGTTCTTCGATTAT
1 TGTAATTGTAATGTTGCAATCAATTTTCTATCAAAATATCCTAACTGACTTAGTTCTTCAATTAT
28165 GACTTTATTTAGGAGCTGGTGTTGC
66 GACTTTATTTAGGAGCTGGTGTTGC
* *
28190 TGTAATTGTAATGTTGCAATCAATTTT-TAATCAAAATCTCTTAACTGACTTAGTTCTTCAATTA
1 TGTAATTGTAATGTTGCAATCAATTTTCT-ATCAAAATATCCTAACTGACTTAGTTCTTCAATTA
*
28254 TGACTTTATTTAGGAGTTGGTGTTGC
65 TGACTTTATTTAGGAGCTGGTGTTGC
*
28280 TGGAATTGT
1 TGTAATTGT
28289 CCTCCCTGAA
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
89 1 0.01
90 91 0.99
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.43
Consensus pattern (90 bp):
TGTAATTGTAATGTTGCAATCAATTTTCTATCAAAATATCCTAACTGACTTAGTTCTTCAATTAT
GACTTTATTTAGGAGCTGGTGTTGC
Found at i:29719 original size:40 final size:39
Alignment explanation
Indices: 29675--29755 Score: 135
Period size: 40 Copynumber: 2.1 Consensus size: 39
29665 AGAATACCCA
*
29675 GACCCATCCTTGCTAATTAGTTGGTAAACAAAGACTATGT
1 GACCCATCCTTGCTAATTAGTTGGTAAAC-AAGACCATGT
*
29715 GACCCATCTTTGCTAATTAGTTGGTAAACAAGACCATGT
1 GACCCATCCTTGCTAATTAGTTGGTAAACAAGACCATGT
29754 GA
1 GA
29756 AAGGCTGAGG
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 11 0.28
40 28 0.72
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30
Consensus pattern (39 bp):
GACCCATCCTTGCTAATTAGTTGGTAAACAAGACCATGT
Found at i:32528 original size:11 final size:11
Alignment explanation
Indices: 32512--32536 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32502 ACTACTTATT
32512 TTTCTTATATA
1 TTTCTTATATA
32523 TTTCTTATATA
1 TTTCTTATATA
32534 TTT
1 TTT
32537 GACAAGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTCTTATATA
Found at i:38027 original size:21 final size:21
Alignment explanation
Indices: 38001--38043 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
37991 CTGAAATCTG
38001 ACTTCATTCCTAGGAACGGGT
1 ACTTCATTCCTAGGAACGGGT
*
38022 ACTTCATTCCTAGGGACGGGT
1 ACTTCATTCCTAGGAACGGGT
38043 A
1 A
38044 ATTTGGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (21 bp):
ACTTCATTCCTAGGAACGGGT
Found at i:44747 original size:31 final size:31
Alignment explanation
Indices: 44679--44772 Score: 116
Period size: 31 Copynumber: 3.0 Consensus size: 31
44669 CCTTTTGTGT
** * **
44679 ACGTGGCATGCCACATGCCACTTTTTGAAAC
1 ACGTGGCATGCCATGTGTCACTTTTTGGTAC
*
44710 ATGTGGCATGCCATGTGTCACTTTTTGGTAC
1 ACGTGGCATGCCATGTGTCACTTTTTGGTAC
* *
44741 ACGTGGCGTGACATGTGTCACTTTTTGGTAC
1 ACGTGGCATGCCATGTGTCACTTTTTGGTAC
44772 A
1 A
44773 TATGGCACGA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.33
Consensus pattern (31 bp):
ACGTGGCATGCCATGTGTCACTTTTTGGTAC
Found at i:48876 original size:24 final size:24
Alignment explanation
Indices: 48841--48886 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
48831 GTTGTTGTTG
*
48841 TTTTCAGCATAATCTAGTCGCTTC
1 TTTTCAGCATAATCTAGCCGCTTC
*
48865 TTTTCAGTATAATCTAGCCGCT
1 TTTTCAGCATAATCTAGCCGCT
48887 ATGCCAGGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.41
Consensus pattern (24 bp):
TTTTCAGCATAATCTAGCCGCTTC
Found at i:74527 original size:50 final size:50
Alignment explanation
Indices: 74452--74558 Score: 187
Period size: 50 Copynumber: 2.1 Consensus size: 50
74442 TACCGGTTTA
74452 CGACTAATCCTATTCGAATCAGAACAGCTCATTATGAGGTAAAGCTCTCC
1 CGACTAATCCTATTCGAATCAGAACAGCTCATTATGAGGTAAAGCTCTCC
* *
74502 CGACTAATCTTATTCGAATCAGAACAGCTCATTATGAGGTCAAGCTCTCC
1 CGACTAATCCTATTCGAATCAGAACAGCTCATTATGAGGTAAAGCTCTCC
*
74552 CGTCTAA
1 CGACTAA
74559 CCCGAGACCT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
CGACTAATCCTATTCGAATCAGAACAGCTCATTATGAGGTAAAGCTCTCC
Found at i:77725 original size:30 final size:31
Alignment explanation
Indices: 77666--77738 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 31
77656 TTCTTTTTAT
* *
77666 TCAAATTGCAACTTAACCTTGTAGATTAGTG
1 TCAAATTGCACCTTAACCTTGTAGATTAGTA
* **
77697 TCAAATTGCACCTTAA-TTTGTATTTTAGTA
1 TCAAATTGCACCTTAACCTTGTAGATTAGTA
*
77727 TCAAATAGCACC
1 TCAAATTGCACC
77739 CTGCACTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
30 21 0.58
31 15 0.42
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (31 bp):
TCAAATTGCACCTTAACCTTGTAGATTAGTA
Found at i:87248 original size:22 final size:22
Alignment explanation
Indices: 87218--87264 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
87208 AAAAAAGTAT
87218 TAAGCGTATATAGTTTATATAC
1 TAAGCGTATATAGTTTATATAC
*
87240 TAAGTGTATATAGTTTATATAC
1 TAAGCGTATATAGTTTATATAC
87262 TAA
1 TAA
87265 CATAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (22 bp):
TAAGCGTATATAGTTTATATAC
Found at i:89260 original size:2 final size:2
Alignment explanation
Indices: 89253--89280 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
89243 GTCAAGATTC
89253 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89281 GTAACTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:94821 original size:19 final size:20
Alignment explanation
Indices: 94775--94822 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
94765 TGTGGCACGC
*
94775 CACATGTACCAAAAAGTCGTGC
1 CACATGTACCAAAAA--CGTGA
94797 CACATGTACCAAAAA-GTGA
1 CACATGTACCAAAAACGTGA
94816 CACATGT
1 CACATGT
94823 CACGCCACGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 10 0.40
22 15 0.60
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CACATGTACCAAAAACGTGA
Found at i:94827 original size:53 final size:53
Alignment explanation
Indices: 94742--94844 Score: 161
Period size: 53 Copynumber: 1.9 Consensus size: 53
94732 GACGTGGCAC
* **
94742 GCCACTTGTACCAAAAAGTGACATGTGGCACGCCACATGTACCAAAAAGTCGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
* *
94795 GCCACATGTACCAAAAAGTGACACATGTCACGCCACGTGTACCAAAAAGT
1 GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGT
94845 AACACATGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.36, C:0.27, G:0.19, T:0.17
Consensus pattern (53 bp):
GCCACATGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTCGT
Found at i:96847 original size:13 final size:13
Alignment explanation
Indices: 96829--96855 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96819 CTCAGCATGG
96829 ATTCATCCTGCAT
1 ATTCATCCTGCAT
96842 ATTCATCCTGCAT
1 ATTCATCCTGCAT
96855 A
1 A
96856 GCCTTTTCTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.30, G:0.07, T:0.37
Consensus pattern (13 bp):
ATTCATCCTGCAT
Found at i:106309 original size:15 final size:15
Alignment explanation
Indices: 106289--106321 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
106279 GCTTACTGAA
106289 ATTTTATGATCTCAT
1 ATTTTATGATCTCAT
106304 ATTTTATGATCTCAT
1 ATTTTATGATCTCAT
106319 ATT
1 ATT
106322 CCAGTTCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (15 bp):
ATTTTATGATCTCAT
Found at i:106446 original size:29 final size:29
Alignment explanation
Indices: 106413--106472 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
106403 ACAAAATACT
*
106413 TAGATTTGAAACTTATGAATAAAAAGAAC
1 TAGATTTGAAAATTATGAATAAAAAGAAC
* *
106442 TAGATTTGAAAATTGTGAATGAAAAGAAC
1 TAGATTTGAAAATTATGAATAAAAAGAAC
106471 TA
1 TA
106473 AGTATTGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.50, C:0.05, G:0.17, T:0.28
Consensus pattern (29 bp):
TAGATTTGAAAATTATGAATAAAAAGAAC
Found at i:115405 original size:1 final size:1
Alignment explanation
Indices: 115399--115423 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
115389 AGGAAGGAGG
115399 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
115424 GACAATACAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:121754 original size:2 final size:2
Alignment explanation
Indices: 121743--121782 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
121733 ATTTCAATGC
*
121743 AT AT -T AT AT AT A- AT AT AT AT AC AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
121783 CGGAGATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 32 0.94
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:136951 original size:2 final size:2
Alignment explanation
Indices: 136944--136974 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
136934 GAGTATTACA
136944 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
136975 GAGGATAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:143149 original size:29 final size:29
Alignment explanation
Indices: 143115--143190 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
143105 ACTTCTAGTG
* *
143115 TTTGGATGTTTTGTTCCC-TAAACTTCAAT
1 TTTGGATATTTTG-CCCCATAAACTTCAAT
* *
143144 TTTGGACATTTTGCCCCATGAACTTCAAT
1 TTTGGATATTTTGCCCCATAAACTTCAAT
* *
143173 TTTGAGATCTTTTACCCC
1 TTTG-GATATTTTGCCCC
143191 CTTAGCCTTA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 3 0.08
29 25 0.66
30 10 0.26
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.43
Consensus pattern (29 bp):
TTTGGATATTTTGCCCCATAAACTTCAAT
Found at i:143343 original size:30 final size:29
Alignment explanation
Indices: 143309--143383 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
143299 AGATTGAGGG
* *
143309 GGCAAAACATCTCAAAATTGAAGTTCATGA
1 GGCAAAACGTC-CAAAATTAAAGTTCATGA
* *
143339 GGCAAAATGTCCAAAATTAAAGTTTATGA
1 GGCAAAACGTCCAAAATTAAAGTTCATGA
*
143368 GACAAAACGTCCAAAA
1 GGCAAAACGTCCAAAA
143384 ACTATATAAG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 30 0.77
30 9 0.23
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (29 bp):
GGCAAAACGTCCAAAATTAAAGTTCATGA
Found at i:149825 original size:2 final size:2
Alignment explanation
Indices: 149818--149842 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
149808 ATGAAGTACA
149818 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
149843 ACAATATTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.