Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011112.1 Corchorus capsularis cultivar CVL-1 contig11133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72863

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116--147
2
16.0
2
100
0
64
50
0
0
50
1.00
8326--8360
17
2.0
18
88
5
54
40
0
0
60
0.97
21614--22858
331
3.8
324
76
8
919
38
14
14
32
1.87
23119--28016
330
14.8
329
79
6
4684
35
16
15
32
1.90
23119--27996
665
7.4
660
82
5
4993
35
16
15
32
1.90
27852--28191
174
1.9
175
94
0
601
38
20
15
25
1.92
28021--30753
333
8.3
333
80
6
2814
35
16
15
32
1.90
30834--31471
320
2.0
320
81
4
739
38
15
13
31
1.88
30895--32041
593
1.9
599
83
5
1469
35
16
15
31
1.90
31491--33950
331
7.4
329
80
5
2642
34
16
16
32
1.91
31484--33880
986
2.4
972
78
10
2365
35
16
16
32
1.91
31488--33950
666
3.7
663
83
4
3171
34
16
16
32
1.91
37396--37563
80
2.1
80
100
0
336
35
19
16
29
1.93
37476--41033
333
10.8
331
79
6
3724
35
16
15
33
1.90
37476--41033
663
5.4
659
82
5
3750
35
16
15
33
1.90
42017--42047
15
2.1
15
100
0
62
48
6
12
32
1.67
42322--42347
4
6.5
4
100
0
52
76
0
0
23
0.78
43131--43173
11
3.8
11
87
3
59
79
0
20
0
0.74
44060--44100
22
1.9
22
85
5
57
39
21
14
24
1.91
45136--45176
3
13.7
3
94
0
64
65
4
0
29
1.13
66410--66603
22
8.9
21
67
11
70
35
14
11
38
1.83
66496--66605
44
2.5
46
80
12
115
35
17
12
34
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66704--66788
23
3.8
22
78
6
82
38
12
5
42
1.68
66680--66981
22
14.0
22
71
13
184
35
15
8
40
1.78
66948--66999
19
2.7
19
93
0
86
23
21
11
44
1.84
66947--67014
19
3.5
19
85
2
82
26
19
10
44
1.82
67096--67261
44
3.9
42
77
11
133
35
10
10
43
1.74
67120--67329
22
9.7
22
72
16
136
35
11
9
42
1.74
67184--67476
22
13.4
22
68
18
91
36
14
10
39
1.80
67540--67700
22
7.2
22
81
8
141
37
18
11
32
1.86
67540--67700
44
3.6
44
79
11
166
37
18
11
32
1.86
67540--67699
68
2.4
67
83
4
189
38
17
11
33
1.85
67576--67723
22
6.6
22
81
6
111
36
16
12
35
1.86
67548--67723
44
4.0
44
79
7
133
38
17
11
33
1.85
67814--67878
30
2.1
32
91
5
107
50
1
16
30
1.55
69112--69143
16
2.0
16
100
0
64
31
31
6
31
1.82
71626--71658
2
16.5
2
93
0
57
54
0
0
45
0.99

Tables:   1

The End!