Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011113.1 Corchorus capsularis cultivar CVL-1 contig11134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48740

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17--62
21
2.2
21
92
0
74
36
10
15
36
1.82
1638--1662
12
2.1
12
100
0
50
0
8
0
92
0.40
2464--2491
14
2.0
14
100
0
56
28
21
7
42
1.79
3644--3671
2
14.0
2
100
0
56
50
0
50
0
1.00
6999--7123
31
4.0
31
84
0
133
34
20
22
22
1.97
9491--9531
20
2.0
20
100
0
82
29
14
34
21
1.93
12870--12957
45
2.0
45
90
4
142
36
20
15
27
1.93
24099--24248
62
2.4
63
81
4
162
38
24
19
17
1.92
24090--24257
31
5.4
31
81
0
147
36
25
20
17
1.94
27404--27559
77
2.0
77
100
0
312
37
12
16
32
1.87
28228--28283
16
3.6
16
73
20
55
50
0
1
48
1.11
28228--28357
15
8.5
15
70
21
76
51
1
2
44
1.23
28228--28365
41
3.4
39
75
18
115
50
1
2
45
1.22
28247--28360
13
8.8
13
68
25
64
51
1
2
43
1.25
31248--31273
12
2.2
12
100
0
52
46
23
7
23
1.78
44281--44313
3
11.3
3
87
6
50
63
0
3
33
1.10
46691--46734
21
2.1
21
83
8
54
18
31
9
40
1.81
47082--47119
19
2.0
19
100
0
76
10
47
36
5
1.61
47099--47165
33
2.0
33
85
5
91
10
35
41
11
1.76

Tables:   1

The End!