Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011121.1 Corchorus capsularis cultivar CVL-1 contig11142, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129002

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1988--2060
30
2.4
30
88
4
103
47
15
12
24
1.79
3133--3334
100
2.0
99
92
0
332
23
10
23
42
1.86
10824--11273
224
2.0
225
94
0
785
41
13
16
28
1.86
13473--14348
439
2.0
437
91
1
1405
36
15
14
33
1.87
15236--16928
333
5.1
328
76
7
1533
36
15
14
33
1.88
15312--16905
653
2.4
656
84
5
2054
36
15
14
32
1.88
23285--23410
66
1.9
66
85
4
173
28
11
32
26
1.92
24851--24885
16
2.2
16
89
0
52
14
25
5
54
1.62
27686--27736
21
2.3
21
83
6
57
11
3
3
80
0.98
29116--29166
21
2.4
21
81
18
61
58
0
0
41
0.98
29118--29166
25
2.0
25
84
8
64
59
0
0
40
0.98
29116--29207
22
4.1
22
68
21
50
55
2
2
40
1.24
29960--29994
17
2.1
17
94
0
61
20
8
22
48
1.76
30751--30853
51
2.0
51
94
0
179
38
10
13
36
1.80
40066--40097
2
16.0
2
100
0
64
50
0
0
50
1.00
43902--43927
12
2.2
12
100
0
52
34
15
0
50
1.45
52698--52727
14
2.1
14
100
0
60
53
13
6
26
1.64
62070--62135
31
2.1
31
94
0
114
50
4
18
27
1.66
63663--63721
25
2.4
25
91
5
95
35
23
0
40
1.55
63754--63818
15
4.6
14
74
12
62
58
7
0
33
1.27
63732--63789
26
2.2
26
84
0
71
56
10
0
32
1.33
64110--64154
21
2.1
21
87
0
63
44
8
33
13
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73112--73145
17
2.0
17
88
11
52
2
5
2
88
0.70
73915--74065
45
3.4
45
93
0
257
41
21
25
11
1.87
82661--82764
28
4.0
28
67
19
89
52
15
5
25
1.64
82680--82775
50
1.9
49
93
2
165
50
15
7
27
1.70
83075--83169
28
3.6
28
67
20
87
53
15
5
25
1.63
83085--83180
50
1.9
50
95
2
176
51
15
6
27
1.67
82670--83483
405
2.0
405
99
0
1610
29
27
12
30
1.93
95419--95456
19
2.0
19
89
0
58
39
15
21
23
1.92
98230--98288
25
2.4
25
78
18
70
59
0
0
40
0.97
98416--98462
5
10.4
5
74
21
50
36
2
0
61
1.08
98416--98459
18
2.4
18
96
0
79
36
2
0
61
1.09
114688--114769
42
2.0
41
95
2
146
23
20
3
52
1.62
126780--126807
2
14.0
2
100
0
56
50
0
0
50
1.00
128949--129002
2
27.5
2
84
3
74
44
1
3
50
1.30

Tables:   1

The End!