Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011128.1 Corchorus capsularis cultivar CVL-1 contig11149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25123
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:6 original size:1 final size:1
Alignment explanation
Indices: 1--29 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
30 CCTTCCTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:511 original size:16 final size:15
Alignment explanation
Indices: 468--516 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 15
458 TTATACCCTT
468 TTAACCTATATATATA
1 TTAA-CTATATATATA
484 -TATA-TATATATATA
1 TTA-ACTATATATATA
498 TTAACTATACTATATA
1 TTAACTATA-TATATA
514 TTA
1 TTA
517 TTTTAACTAC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
14 11 0.38
15 8 0.28
16 10 0.34
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAACTATATATATA
Found at i:514 original size:2 final size:2
Alignment explanation
Indices: 474--498 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
464 CCTTTTAACC
474 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
499 TAACTATACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:522 original size:21 final size:21
Alignment explanation
Indices: 482--525 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
472 CCTATATATA
482 TATATATATATATATATTAAC
1 TATATATATATATATATTAAC
*
503 TATACTATATAT-TATTTTAAC
1 TATA-TATATATATATATTAAC
524 TA
1 TA
526 CTATGGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (21 bp):
TATATATATATATATATTAAC
Found at i:3496 original size:33 final size:33
Alignment explanation
Indices: 3459--3541 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
3449 CGCAAAGCGA
*
3459 TGGCCGGTTG-TGGCCGGACATGTCC-ATGTCGCG
1 TGGCCGG-TGATGGCCGGACATCTCCGA-GTCGCG
*
3492 TGGCCGGTGATGGCCGGGCATCTCCGAGTCGCG
1 TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG
*
3525 TGGCCGGTGTTGGCCGG
1 TGGCCGGTGATGGCCGG
3542 TGTTGGCCGG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
32 2 0.04
33 42 0.93
34 1 0.02
ACGTcount: A:0.07, C:0.28, G:0.43, T:0.22
Consensus pattern (33 bp):
TGGCCGGTGATGGCCGGACATCTCCGAGTCGCG
Found at i:3539 original size:43 final size:43
Alignment explanation
Indices: 3492--3575 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
3482 CCATGTCGCG
* *
3492 TGGCCGGTGATGGCCGGGCATCTCCGAGTCGCGTGGCCGGTGT
1 TGGCCGGTGATGGCCGGGCATCTCCAAGTCGCATGGCCGGTGT
* * *
3535 TGGCCGGTGTTGGCCGGTCTTCTCCAAGTCGCATGGCCGGT
1 TGGCCGGTGATGGCCGGGCATCTCCAAGTCGCATGGCCGGT
3576 TACTCGCACC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.07, C:0.29, G:0.40, T:0.24
Consensus pattern (43 bp):
TGGCCGGTGATGGCCGGGCATCTCCAAGTCGCATGGCCGGTGT
Found at i:3540 original size:10 final size:10
Alignment explanation
Indices: 3525--3552 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
3515 CCGAGTCGCG
3525 TGGCCGGTGT
1 TGGCCGGTGT
3535 TGGCCGGTGT
1 TGGCCGGTGT
3545 TGGCCGGT
1 TGGCCGGT
3553 CTTCTCCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.50, T:0.29
Consensus pattern (10 bp):
TGGCCGGTGT
Found at i:7866 original size:331 final size:329
Alignment explanation
Indices: 7257--7950 Score: 862
Period size: 331 Copynumber: 2.1 Consensus size: 329
7247 CTCGACGCCG
* * * *
7257 AAAATCATACAAAACTGAGCTGGGGCTCCGA-AACGCGTTTTAGCAAAAAACCGTGATGGTTAGT
1 AAAATCATACAAAACTGACCCGGGG-TCCCAGAACGCGTTTTAGCAAAAAACCGTGATGATTAGT
* * * *
7321 ATACAATTTCGGCTAAAATTTTGAAAAAATGACCAGTAAAATTTTTCCTCAATTTTTGACTAAAA
65 ATACAATTTCGGCTAAAATTATGAAAAAATGACCAGGAAAATATTTCATCAATTTTTGACTAAAA
* * * ** *** *
7386 TACTCATGAAATATATAATTTAACGTCAAAAAATTTGGAGGACTTTTTCCCGCTTTTTATATTGT
130 TACTCATAAAATATATAATTCAACGTCAAAAAATTTGAAGGACTTTTTAACGCTTCCAATATCGT
* * * *
7451 TTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCGAAACACGATTCAAATCCTCGTAAAAAC
195 TTTTCATAATATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATCCTCGTAAAAAC
* * * * *
7516 AAATCCTTGAATGCAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAGTCTTAG
260 AAATCCTTAAATCCAATGTGACTGAGATTTGAATAGATGAATATAGATATCTCAAGGAGTCTTAG
7581 AGCCA
325 AGCCA
* * *
7586 AAAATCATACAAAACTGACCCGGGGTCCTAGAACGCGTTATTAGCGAAAAATCGTGATGATTA-T
1 AAAATCATACAAAACTGACCCGGGGTCCCAGAACGCGTT-TTAGCAAAAAACCGTGATGATTAGT
* * *
7650 A-ACATAATTTCGGCTAAAGTTATGAAAAATTGACC-GGAAAGATATTTCATCAATTTTTGGCTA
65 ATAC--AATTTCGGCTAAAATTATGAAAAAATGACCAGGAAA-ATATTTCATCAATTTTTGACTA
* *
7713 AAATACTCATAAAAAATATATAATTCAACG-CTAAAAATATTGAAGG-GTTTTTAACGCTTCCAA
127 AAATACTCAT--AAAATATATAATTCAACGTCAAAAAAT-TTGAAGGACTTTTTAACGCTTCCAA
* * * *
7776 TATCGTTTTTCCTAATATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGT
189 TATCGTTTTTCATAATATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATCCTCGT
* *
7841 AAAAAGAAATCCTTAAATCCAATGTGACTGAGATTTGAATAGATGAATATAGATATTTCAAGGAG
254 AAAAACAAATCCTTAAATCCAATGTGACTGAGATTTGAATAGATGAATATAGATATCTCAAGGAG
* *
7906 TCTTGGCGCCA
319 TCTTAGAGCCA
* *
7917 AAAATCATGA-AAAAATGACCCGGGGCCCCAGAAC
1 AAAATCAT-ACAAAACTGACCCGGGGTCCCAGAAC
7951 TAACACGATT
Statistics
Matches: 312, Mismatches: 44, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
328 6 0.02
329 37 0.12
330 76 0.24
331 170 0.54
332 23 0.07
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (329 bp):
AAAATCATACAAAACTGACCCGGGGTCCCAGAACGCGTTTTAGCAAAAAACCGTGATGATTAGTA
TACAATTTCGGCTAAAATTATGAAAAAATGACCAGGAAAATATTTCATCAATTTTTGACTAAAAT
ACTCATAAAATATATAATTCAACGTCAAAAAATTTGAAGGACTTTTTAACGCTTCCAATATCGTT
TTTCATAATATTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAAATCCTCGTAAAAACA
AATCCTTAAATCCAATGTGACTGAGATTTGAATAGATGAATATAGATATCTCAAGGAGTCTTAGA
GCCA
Found at i:8965 original size:306 final size:305
Alignment explanation
Indices: 8366--9188 Score: 747
Period size: 306 Copynumber: 2.6 Consensus size: 305
8356 ATTCAACGCC
* * *
8366 AAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
1 AAAAACATTGAAGGACTTTTCACGCTTTTAATATCATTTTTCATATTTTTCTGAATTAATTTCTA
* ** * * *
8431 ATTAAATCGAAACAAGATTTAGATGCTCGTAAAGGCAAATCTTTAAATGCAATGTGCCTAATATT
66 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGACTAAGATT
* * * * * *
8496 TTATTAGATAAATATAGATATTTTAAAGAGTGTCGGCGCCAAAAATCATGCAAAATCGAGCATGG
131 TGATTAGACAAATATAGATATCTCAAAGAGTCTCGGCGCCAAAAATCATGCAAAACCGAGCA-GG
* *
8561 GACCCGAAGCGCATTTTTAGCAAAAAACGGTGATGTAACGTACACGATTTTGGCTAAAATTCAGC
195 CACCCGAAGCGCATTTTTAGCAAAAAACGGTGATGTAACGTACACGATTTCGGCTAAAATTCAGC
* * * *
8626 AAAAAATGACCGGTAAAGTTTTTCCTTAATTTTTGGATAAAATACT
260 AAAAAATAACCCGTAAAGTATTTCCTCAATTTTTGGATAAAATACT
* *
8672 AAAAACATTGGAGGACTTTTCACGCTTTTAATATCATTTTTCATATTTTTTTGAATTAATTTCTA
1 AAAAACATTGAAGGACTTTTCACGCTTTTAATATCATTTTTCATATTTTTCTGAATTAATTTCTA
* * * *
8737 ATTAAATCGAAACAAGATTCAGATGCTTGTAAAAATAAATTTTTAAATCCAATGTGACTGAGATT
66 ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGACTAAGATT
* * * * * *
8802 TGATTAGACGAATATGGATATCTCAAGGAGTCTTGGCGCCAAAAATTATTCAAAACCGAGTCA-G
131 TGATTAGACAAATATAGATATCTCAAAGAGTCTCGGCGCCAAAAATCATGCAAAACCGAG-CAGG
* ** * * * *
8866 CACCCCAGAA-CGCTTTTTTAGCCGAAAACTGTGATGGTTA-TTACACGATTTCGGCTAAAATTT
195 CA-CCC-GAAGCGCATTTTTAGCAAAAAACGGTGAT-GTAACGTACACGATTTCGGCTAAAATTC
* * * * *
8929 GGTAAAAATTAACCCG-AAAGATATTTCCTCAATTTTTTTGTTAAAATACTCTT
257 AGCAAAAAATAACCCGTAAAG-TATTTCCTCAA-TTTTTGGATAAAATA--C-T
* * * * ** * *
8982 AAAAATATATAATTCAAAGCCAAAAATATTGAAGGGCTTTTGACGTTTCTAATATCGTTTTTCCT
1 --AAA-A-A-CATT-GAAG----GACT-TTTCA---C----G-C-TTT-TAATATCATTTTTCAT
** * *
9047 ATTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTAGTAAAAACAAATCCT
45 A-TTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTT
* * ** * *
9112 TAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTC-AAGTAGTCTCGGAGCCAA
109 TAAATCCAATGTGACTAAGATTTGATTAGACAAATATAGATATCTCAAAG-AGTCTCGGCGCCAA
9176 AAATCATGCAAAA
173 AAATCATGCAAAA
9189 TTGAGCCGTG
Statistics
Matches: 415, Mismatches: 70, Indels: 38
0.79 0.13 0.07
Matches are distributed among these distances:
305 6 0.01
306 227 0.55
307 21 0.05
309 1 0.00
310 1 0.00
312 3 0.01
313 1 0.00
314 1 0.00
315 3 0.01
316 2 0.00
320 2 0.00
321 3 0.01
324 1 0.00
328 1 0.00
329 1 0.00
330 3 0.01
331 17 0.04
332 121 0.29
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (305 bp):
AAAAACATTGAAGGACTTTTCACGCTTTTAATATCATTTTTCATATTTTTCTGAATTAATTTCTA
ATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCTTTAAATCCAATGTGACTAAGATT
TGATTAGACAAATATAGATATCTCAAAGAGTCTCGGCGCCAAAAATCATGCAAAACCGAGCAGGC
ACCCGAAGCGCATTTTTAGCAAAAAACGGTGATGTAACGTACACGATTTCGGCTAAAATTCAGCA
AAAAATAACCCGTAAAGTATTTCCTCAATTTTTGGATAAAATACT
Found at i:9438 original size:335 final size:332
Alignment explanation
Indices: 8672--9479 Score: 971
Period size: 335 Copynumber: 2.4 Consensus size: 332
8662 ATAAAATACT
* * * *
8672 AAAAACATTGGAGGACTTTTCACGCTTTTAATATCATTTTTCAT-ATTTTTTTGAATTAATTTCT
1 AAAAAAATTGGAGGGCTTTTCACGCTTTTAATATCATTTTTCATAATTTTTCTAAATTAATTTCT
* * * *
8736 AATTAAATCGAAACAAGATTCAGATGCTTGTAAAAATAAATTTTTAAATCCAATGTGACTGAGAT
66 AATTAAATCGAAACAAGATTCAGATGCTAGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGAT
* * * * * * *
8801 TTGATTAGACGAATATGGATATCTCAAGGAGTCTTGGCGCCAAAAATTATTCAAAACCGAGTCAG
131 TTGATTAGATGAATATAGATATCTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACCGAGCCAG
* * * * * ** *
8866 CACCCCAGAACGCTTTTTTAGCCGAAAACTGTGATGGTTATTACACGATTTCGGCTAAAATTTGG
196 CACCCCAGAACACGTTTTTAACCAAAAACTATGATGGTTAGAACACGATTTCAGCTAAAATTTGG
* * * * **
8931 TAAAAATTAACCCGAAAGATATTTCCTCAATTTTTTTGTTAAAATACTCTTAAAAATATATAATT
261 CAAAAATTAACACGAAAGATATTTCCTCAATTTTTTGGCTAAAATACTCACAAAAATATATAATT
8996 CAAAGCC
326 CAAAGCC
* * * * * * *
9003 AAAAATATTGAAGGGCTTTTGACG-TTTCTAATATCGTTTTTCCTATTTTTTCCAAATTAATTTC
1 AAAAAAATTGGAGGGCTTTTCACGCTTT-TAATATCATTTTTCATAATTTTTCTAAATTAATTTC
*
9067 TAATTAAATCGAAACAAGATTCAGATGCTAGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGA
65 TAATTAAATCGAAACAAGATTCAGATGCTAGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGA
* * **
9132 TTTGATTAGATGAATATAGATATTTCAAGTAGTCTCGGAGCCAAAAATCATGCAAAATTGAGCCG
130 TTTGATTAGATGAATATAGATATCTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACCGAGCC-
* * * * * *
9197 TGTA-CCCGGAACACGTTTTTAACCAAAAACCATTATGTTTTGTTAGAATACGATTTCAGCTAAA
194 AGCACCCCAGAACACGTTTTTAACCAAAAA-C--TATG-ATGGTTAGAACACGATTTCAGCTAAA
* * *
9261 ATTTTGCAAAAATTGATACGAAAGAT-TTCTCCTCAA-TTTTTGGCTAAAATACTCACAAAAATA
255 ATTTGGCAAAAATTAACACGAAAGATATT-TCCTCAATTTTTTGGCTAAAATACTCACAAAAATA
9324 TATAATTCAACA-CC
319 TATAATTCAA-AGCC
* * *
9338 AAAAAAATTGGAGGGCTTTTTACGCTTTTAATATCATATTTCTTAATTTTTCTAAATTAATTTCT
1 AAAAAAATTGGAGGGCTTTTCACGCTTTTAATATCATTTTTCATAATTTTTCTAAATTAATTTCT
* * * * * *
9403 AATTAAATCGAAACAAGATTTAAATGCTCGTAAAAACAAATTCTTAAATCCAATTTTGCTAAGAT
66 AATTAAATCGAAACAAGATTCAGATGCTAGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGAT
9468 TTGATTAGATGA
131 TTGATTAGATGA
9480 TGTAAAGTAT
Statistics
Matches: 403, Mismatches: 64, Indels: 16
0.83 0.13 0.03
Matches are distributed among these distances:
330 3 0.01
331 34 0.08
332 148 0.37
333 3 0.01
335 163 0.40
336 52 0.13
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (332 bp):
AAAAAAATTGGAGGGCTTTTCACGCTTTTAATATCATTTTTCATAATTTTTCTAAATTAATTTCT
AATTAAATCGAAACAAGATTCAGATGCTAGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGAT
TTGATTAGATGAATATAGATATCTCAAGGAGTCTCGGAGCCAAAAATCATGCAAAACCGAGCCAG
CACCCCAGAACACGTTTTTAACCAAAAACTATGATGGTTAGAACACGATTTCAGCTAAAATTTGG
CAAAAATTAACACGAAAGATATTTCCTCAATTTTTTGGCTAAAATACTCACAAAAATATATAATT
CAAAGCC
Found at i:10021 original size:78 final size:77
Alignment explanation
Indices: 9875--10141 Score: 383
Period size: 78 Copynumber: 3.4 Consensus size: 77
9865 GAGAGAGGTA
* ** * *
9875 TTGGGCCTCGGTTCCAAATCACTAGTAAATGATTTTTTCCCCTCTT-TTAAGATAACCATCATCA
1 TTGGGCCTCGGTTCGAAATCTTTAGCAAATGA-TTTTT--CCTCTTCTTAAGATCACCATCATCA
9939 CCATAAGCCGAAAGG
63 CCATAAGCCGAAAGG
* * *
9954 TTAGGCCTGGGTTCGAAATCTTTAGCAAATGATTTTTCCTCTTCTTCAAGATCACCATCACCACC
1 TTGGGCCTCGGTTCGAAATCTTTAGCAAATGATTTTTCCTCTTCTT-AAGATCACCATCATCACC
10019 ATAAGCCGAAAGG
65 ATAAGCCGAAAGG
**
10032 TTGGGCCTCGGTTCGAAATCTTTAGCAAATGATTTTTTTTCTTCTTTAAGATCACCATCATCACC
1 TTGGGCCTCGGTTCGAAATCTTTAGCAAATGATTTTTCCTCTTC-TTAAGATCACCATCATCACC
10097 ATAAGCCGAAAGG
65 ATAAGCCGAAAGG
*
10110 TTGGGCCTGGGTTCGAAATCTTTAGCAAATGA
1 TTGGGCCTCGGTTCGAAATCTTTAGCAAATGA
10142 ACGTTCCTTC
Statistics
Matches: 171, Mismatches: 14, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
76 6 0.04
77 2 0.01
78 135 0.79
79 28 0.16
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (77 bp):
TTGGGCCTCGGTTCGAAATCTTTAGCAAATGATTTTTCCTCTTCTTAAGATCACCATCATCACCA
TAAGCCGAAAGG
Found at i:22509 original size:62 final size:62
Alignment explanation
Indices: 22442--22582 Score: 183
Period size: 62 Copynumber: 2.3 Consensus size: 62
22432 TCCTTTTGTG
* * *
22442 CACGTGGCATGCCACGTGCCATTTTTTGAAACATATGGCATGCCACGTGTCACTTTTGGGTA
1 CACGTGGCGTGCCACGTGCCACTTTTTGAAACATATGGCATGCCACATGTCACTTTTGGGTA
* * * ** * * *
22504 CACGTGGCGTGACATGTGTCACTTTTTGGTACATGTGGCGTGCCACATGTCACTTTTTGGTA
1 CACGTGGCGTGCCACGTGCCACTTTTTGAAACATATGGCATGCCACATGTCACTTTTGGGTA
22566 CACGTGGCGTGCCACGT
1 CACGTGGCGTGCCACGT
22583 CGGACACTGT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 66 1.00
ACGTcount: A:0.18, C:0.24, G:0.27, T:0.31
Consensus pattern (62 bp):
CACGTGGCGTGCCACGTGCCACTTTTTGAAACATATGGCATGCCACATGTCACTTTTGGGTA
Found at i:22523 original size:31 final size:31
Alignment explanation
Indices: 22485--22582 Score: 142
Period size: 31 Copynumber: 3.2 Consensus size: 31
22475 TATGGCATGC
*
22485 CACGTGTCACTTTTGGGTACACGTGGCGTGA
1 CACGTGTCACTTTTTGGTACACGTGGCGTGA
* * *
22516 CATGTGTCACTTTTTGGTACATGTGGCGTGC
1 CACGTGTCACTTTTTGGTACACGTGGCGTGA
* *
22547 CACATGTCACTTTTTGGTACACGTGGCGTGC
1 CACGTGTCACTTTTTGGTACACGTGGCGTGA
22578 CACGT
1 CACGT
22583 CGGACACTGT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.15, C:0.23, G:0.29, T:0.33
Consensus pattern (31 bp):
CACGTGTCACTTTTTGGTACACGTGGCGTGA
Done.