Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001113.1 Corchorus capsularis cultivar CVL-1 contig01113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2416
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37


Found at i:85 original size:24 final size:25

Alignment explanation


    Indices: 41--90  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

         31 CAGCAGGCCA

                                     
         41 ATTGTAAATATAAAAAGTAAATTAT
          1 ATTGTAAATATAAAAAGTAAATTAT

                                     
         66 ATTGTAAATATAAAAA-TAAATTAT
          1 ATTGTAAATATAAAAAGTAAATTAT

             
         90 A
          1 A

         91 AATAATATAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  24    9  0.36
  25   16  0.64

ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36


Consensus pattern (25 bp):   
ATTGTAAATATAAAAAGTAAATTAT
Done.