Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011131.1 Corchorus capsularis cultivar CVL-1 contig11152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108904

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
244--1354
332
3.4
321
80
8
1152
36
16
14
33
1.88
1819--1874
26
2.1
27
83
6
71
62
5
8
23
1.45
4286--4324
19
2.0
20
90
5
62
66
5
10
17
1.39
4286--4325
20
2.0
20
85
9
55
67
5
10
17
1.37
4956--5025
29
2.4
29
85
2
86
41
28
10
20
1.84
6323--6347
2
12.5
2
100
0
50
52
0
0
48
1.00
7701--7735
2
17.5
2
100
0
70
48
0
0
51
1.00
13634--13740
48
2.2
48
91
1
180
38
12
14
34
1.84
19418--19494
40
1.9
40
86
0
109
27
15
16
40
1.89
20521--21192
333
2.0
333
91
0
1094
39
21
12
26
1.89
21993--22018
5
5.2
5
100
0
52
80
0
19
0
0.71
28736--28770
11
3.2
11
87
0
52
74
17
8
0
1.06
40837--40866
13
2.3
13
100
0
60
73
0
13
13
1.10
43371--43405
5
7.0
5
100
0
70
40
20
0
40
1.52
48046--48070
9
2.8
9
100
0
50
56
24
0
20
1.43
51629--51658
12
2.6
11
90
10
51
90
0
10
0
0.47
68995--69039
22
2.2
20
84
11
56
40
22
17
20
1.92
68959--69061
53
1.9
53
90
0
161
35
25
20
18
1.95
78231--78338
51
2.1
51
92
0
180
37
20
20
21
1.94
84395--84420
2
13.0
2
100
0
52
50
0
0
50
1.00
84782--84817
14
2.6
14
86
4
56
83
0
16
0
0.65
87329--87496
24
6.8
25
79
15
181
44
26
17
11
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87335--87490
78
2.0
78
90
5
244
44
26
17
10
1.81
87718--87994
36
7.7
36
82
4
281
30
19
30
19
1.97
94673--94698
13
2.0
13
100
0
52
15
7
15
61
1.55
108852--108900
2
24.5
2
100
0
98
51
0
48
0
1.00

Tables:   1

The End!