Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011133.1 Corchorus capsularis cultivar CVL-1 contig11154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121375

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
807--839
2
16.5
2
100
0
66
48
0
0
51
1.00
6102--6140
6
6.5
6
100
0
78
82
0
17
0
0.68
34162--34313
69
2.2
70
88
3
218
52
1
11
34
1.45
51502--51530
14
2.1
14
100
0
58
62
6
17
13
1.52
60655--60725
29
2.4
30
78
4
81
23
9
23
42
1.84
69833--69866
16
2.1
16
100
0
68
20
23
5
50
1.70
71075--71413
167
2.0
167
99
0
669
34
10
14
40
1.80
93350--93434
42
2.0
42
100
0
170
41
14
11
32
1.82
107565--107692
3
42.7
3
82
0
157
63
2
31
3
1.23
118867--118895
2
14.5
2
100
0
58
48
0
0
51
1.00
119977--120015
18
2.2
18
100
0
78
15
25
5
53
1.62
120073--120179
53
2.0
53
96
0
196
42
10
6
41
1.65

Tables:   1

The End!